miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10817 5' -54.7 NC_002794.1 + 195633 0.67 0.94961
Target:  5'- gGCCGGCGACgacgagCCgCACGcacUCGCC -3'
miRNA:   3'- aCGGCUGCUGa-----GGgGUGUagaAGUGG -5'
10817 5' -54.7 NC_002794.1 + 195597 0.68 0.926118
Target:  5'- gGCCGACGcGC-CCCCGCG-CUggCGuCCg -3'
miRNA:   3'- aCGGCUGC-UGaGGGGUGUaGAa-GU-GG- -5'
10817 5' -54.7 NC_002794.1 + 195009 0.68 0.936206
Target:  5'- cUGCCgGGCGaACUCCUCgaaGUCgcgCGCCg -3'
miRNA:   3'- -ACGG-CUGC-UGAGGGGug-UAGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 194818 0.67 0.939982
Target:  5'- aGCCGcaGCGACgcgcgcucgcggCCCgGCGUCUccagccgCACCg -3'
miRNA:   3'- aCGGC--UGCUGa-----------GGGgUGUAGAa------GUGG- -5'
10817 5' -54.7 NC_002794.1 + 194167 0.72 0.759609
Target:  5'- cUGCCGGCGcgccuuCUCCguCCGCAcgUUCACCg -3'
miRNA:   3'- -ACGGCUGCu-----GAGG--GGUGUagAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 194029 0.73 0.691679
Target:  5'- cGCCGGCGcCUCgCCCGCcgCcgcCGCCg -3'
miRNA:   3'- aCGGCUGCuGAG-GGGUGuaGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 193981 0.66 0.970463
Target:  5'- cGCCG-CGGCcgcuaccgccgCCCC-CggCUUCGCCu -3'
miRNA:   3'- aCGGCuGCUGa----------GGGGuGuaGAAGUGG- -5'
10817 5' -54.7 NC_002794.1 + 193939 0.66 0.973217
Target:  5'- cGCCGGCucCggCCCCGCcgCcacCGCCg -3'
miRNA:   3'- aCGGCUGcuGa-GGGGUGuaGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 193793 0.7 0.838673
Target:  5'- cGcCCGACGACgccggCgCCCGCucGUCUggCGCCg -3'
miRNA:   3'- aC-GGCUGCUGa----G-GGGUG--UAGAa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 193378 0.66 0.964357
Target:  5'- gGCCG-CG-CUCCUCGcCGUCgucCGCCu -3'
miRNA:   3'- aCGGCuGCuGAGGGGU-GUAGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 192681 0.66 0.973217
Target:  5'- cGCCGGCcGCcgUCgUACGUCUUCAgCa -3'
miRNA:   3'- aCGGCUGcUGa-GGgGUGUAGAAGUgG- -5'
10817 5' -54.7 NC_002794.1 + 192438 0.68 0.915102
Target:  5'- gGCCGGCGcgucGCgcgCCUCGCAgUCgcgCGCCa -3'
miRNA:   3'- aCGGCUGC----UGa--GGGGUGU-AGaa-GUGG- -5'
10817 5' -54.7 NC_002794.1 + 190529 0.66 0.967511
Target:  5'- gUGCCGAuCGuCgUCCaccagcgguCCGCGUCcgUCGCCg -3'
miRNA:   3'- -ACGGCU-GCuG-AGG---------GGUGUAGa-AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 190159 0.66 0.964357
Target:  5'- cUGgCGGCGGCUCuccucgaacaCCCGCcgCgcCACCu -3'
miRNA:   3'- -ACgGCUGCUGAG----------GGGUGuaGaaGUGG- -5'
10817 5' -54.7 NC_002794.1 + 187847 0.68 0.931278
Target:  5'- cGCCGAgGGCUCUgcccagCCGCGcgCggcUCGCCg -3'
miRNA:   3'- aCGGCUgCUGAGG------GGUGUa-Ga--AGUGG- -5'
10817 5' -54.7 NC_002794.1 + 187595 0.69 0.89032
Target:  5'- cGCCGucGCGACgCCCgGCGUCgcccagaGCCg -3'
miRNA:   3'- aCGGC--UGCUGaGGGgUGUAGaag----UGG- -5'
10817 5' -54.7 NC_002794.1 + 187523 0.66 0.964357
Target:  5'- cGCgGAgGaACUCCCCGCcgCcgcgacCGCCg -3'
miRNA:   3'- aCGgCUgC-UGAGGGGUGuaGaa----GUGG- -5'
10817 5' -54.7 NC_002794.1 + 186941 0.66 0.960995
Target:  5'- cGCCGccACGGC-CCCCggGCcgCUggcCGCCg -3'
miRNA:   3'- aCGGC--UGCUGaGGGG--UGuaGAa--GUGG- -5'
10817 5' -54.7 NC_002794.1 + 186116 0.7 0.830515
Target:  5'- cGCCGcCGGgUCCCCGgAUCUcCAgCa -3'
miRNA:   3'- aCGGCuGCUgAGGGGUgUAGAaGUgG- -5'
10817 5' -54.7 NC_002794.1 + 185790 0.67 0.945371
Target:  5'- gGCCGGCG-CggggaCCCACA---UCGCCg -3'
miRNA:   3'- aCGGCUGCuGag---GGGUGUagaAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.