Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10818 | 3' | -54.7 | NC_002794.1 | + | 23458 | 0.69 | 0.846497 |
Target: 5'- gUCCGGAUCGAcgUCGGGGCGg---- -3' miRNA: 3'- gAGGUCUAGCUcgAGCUCCGCauguu -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 53294 | 0.66 | 0.96207 |
Target: 5'- aCUCCAGGUgcCGAGCggUCGGccGGCGccGCGAg -3' miRNA: 3'- -GAGGUCUA--GCUCG--AGCU--CCGCa-UGUU- -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 64527 | 1.06 | 0.007093 |
Target: 5'- cCUCCAGAUCGAGCUCGAGGCGUACAAc -3' miRNA: 3'- -GAGGUCUAGCUCGAGCUCCGCAUGUU- -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 79942 | 0.76 | 0.468539 |
Target: 5'- cCUCCuGGccuacugCGAGCUCGuGGCGUACGAc -3' miRNA: 3'- -GAGGuCUa------GCUCGAGCuCCGCAUGUU- -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 95040 | 0.67 | 0.932266 |
Target: 5'- -gCCGGuggCGGcGCcCGAGGCGUACGu -3' miRNA: 3'- gaGGUCua-GCU-CGaGCUCCGCAUGUu -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 97573 | 0.71 | 0.757867 |
Target: 5'- gCUCCGGGUUGGuGgUCGAGGCGUccccguucuACGAu -3' miRNA: 3'- -GAGGUCUAGCU-CgAGCUCCGCA---------UGUU- -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 103749 | 0.72 | 0.728699 |
Target: 5'- gCUCCAGGUcCGGGUacuccUCGAagauGGCGUGCAu -3' miRNA: 3'- -GAGGUCUA-GCUCG-----AGCU----CCGCAUGUu -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 103785 | 0.67 | 0.927065 |
Target: 5'- uCUCCGGcggcUGAGCUUGAGGUGcgccUGCGAc -3' miRNA: 3'- -GAGGUCua--GCUCGAGCUCCGC----AUGUU- -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 111435 | 0.66 | 0.950689 |
Target: 5'- -gCCAGAUCG-GCagUCGGGGCGg---- -3' miRNA: 3'- gaGGUCUAGCuCG--AGCUCCGCauguu -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 113919 | 0.75 | 0.566239 |
Target: 5'- cCUCCAGGUCGGccGC-CGAGGCG-ACGGg -3' miRNA: 3'- -GAGGUCUAGCU--CGaGCUCCGCaUGUU- -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 117537 | 0.7 | 0.795154 |
Target: 5'- gCUCCAGGUUGccgugcagcAGCUCGAgccGGuCGUGCAGc -3' miRNA: 3'- -GAGGUCUAGC---------UCGAGCU---CC-GCAUGUU- -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 119111 | 0.67 | 0.941489 |
Target: 5'- gUCCAGAUCGGGgaCGcagaaggccuggcAGGCGUuCGGg -3' miRNA: 3'- gAGGUCUAGCUCgaGC-------------UCCGCAuGUU- -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 145485 | 0.66 | 0.946437 |
Target: 5'- -gCCgaGGAUcgCGAGgaUGAGGCGUGCGAa -3' miRNA: 3'- gaGG--UCUA--GCUCgaGCUCCGCAUGUU- -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 152667 | 0.66 | 0.946437 |
Target: 5'- gCUCgAGcaguaucgCGAGCUgGGGGUGUGCGc -3' miRNA: 3'- -GAGgUCua------GCUCGAgCUCCGCAUGUu -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 152919 | 0.76 | 0.497038 |
Target: 5'- gUCCGGAUCGAgGCcCG-GGCGUACAu -3' miRNA: 3'- gAGGUCUAGCU-CGaGCuCCGCAUGUu -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 154812 | 0.66 | 0.954709 |
Target: 5'- -aUCAGAUCGGGgUCGuucaAGGCGUccGCGg -3' miRNA: 3'- gaGGUCUAGCUCgAGC----UCCGCA--UGUu -5' |
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10818 | 3' | -54.7 | NC_002794.1 | + | 180642 | 0.69 | 0.862129 |
Target: 5'- gCUCCAGAcgaCGAGCcagCGcaGGGCGUGCc- -3' miRNA: 3'- -GAGGUCUa--GCUCGa--GC--UCCGCAUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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