miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 181125 0.66 0.778364
Target:  5'- cACCUucaGGAgcaccagcgcuucuuCCGCCUCCAGCccguccgccgcgccGACggcgaaCGGCg -3'
miRNA:   3'- -UGGA---CCU---------------GGCGGAGGUCG--------------CUGa-----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 191729 0.66 0.777483
Target:  5'- gGCCcacGGACgCGaCCUCCgAG-GACUCGGa -3'
miRNA:   3'- -UGGa--CCUG-GC-GGAGG-UCgCUGAGCCg -5'
10818 5' -61.1 NC_002794.1 + 82467 0.66 0.777483
Target:  5'- gACCUcGACgccgucgGCCUCC-GCGACgCGGCc -3'
miRNA:   3'- -UGGAcCUGg------CGGAGGuCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 107307 0.66 0.777483
Target:  5'- uCCUcgcgGGGgCGCCgUCCGcGCGGUUCGGCu -3'
miRNA:   3'- uGGA----CCUgGCGG-AGGU-CGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 29075 0.66 0.777483
Target:  5'- aACUccGACUGUgaCguGCGGCUCGGCu -3'
miRNA:   3'- -UGGacCUGGCGgaGguCGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 82417 0.66 0.774831
Target:  5'- cGCCgc--CCGUCUUCGucuucccucagcucGCGGCUCGGCa -3'
miRNA:   3'- -UGGaccuGGCGGAGGU--------------CGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 140292 0.66 0.768604
Target:  5'- uUUUGGGCCucucggccaagGCCUgCCGGCGGCUggagaaguccuUGGCg -3'
miRNA:   3'- uGGACCUGG-----------CGGA-GGUCGCUGA-----------GCCG- -5'
10818 5' -61.1 NC_002794.1 + 64980 0.66 0.768604
Target:  5'- cGCCU--ACCGCC-CCAGCuGCacuggCGGCa -3'
miRNA:   3'- -UGGAccUGGCGGaGGUCGcUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 58131 0.66 0.768604
Target:  5'- cCCUGGGCgGCCUggcCCGcCGcCUCGuGCa -3'
miRNA:   3'- uGGACCUGgCGGA---GGUcGCuGAGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 93998 0.66 0.768604
Target:  5'- ---cGGA-CGCCggcgCCGGCGGCgggcCGGCg -3'
miRNA:   3'- uggaCCUgGCGGa---GGUCGCUGa---GCCG- -5'
10818 5' -61.1 NC_002794.1 + 68184 0.66 0.768604
Target:  5'- uCCUGaACCGCaagaUCCGGCcGCUCuacuGGCa -3'
miRNA:   3'- uGGACcUGGCGg---AGGUCGcUGAG----CCG- -5'
10818 5' -61.1 NC_002794.1 + 12493 0.66 0.768604
Target:  5'- cACCUGcacguucccgaGCCGCUcgaCCGGCGGCUgGGUg -3'
miRNA:   3'- -UGGACc----------UGGCGGa--GGUCGCUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 65130 0.66 0.768604
Target:  5'- cGCCUGu-CCGagCUCCucGGCGACUgGGUc -3'
miRNA:   3'- -UGGACcuGGCg-GAGG--UCGCUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 172476 0.66 0.759616
Target:  5'- cACC-GuGACCGCUUCUAcuGUGACguguUCGGCu -3'
miRNA:   3'- -UGGaC-CUGGCGGAGGU--CGCUG----AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 134103 0.66 0.759616
Target:  5'- uGCCggacgacGGACCcCCUCCGucCGACggcgCGGCg -3'
miRNA:   3'- -UGGa------CCUGGcGGAGGUc-GCUGa---GCCG- -5'
10818 5' -61.1 NC_002794.1 + 16205 0.66 0.759616
Target:  5'- cGCCUGGGCacgGUCgaggUCCGGCGGgUCaGGUc -3'
miRNA:   3'- -UGGACCUGg--CGG----AGGUCGCUgAG-CCG- -5'
10818 5' -61.1 NC_002794.1 + 106065 0.66 0.759616
Target:  5'- aACgUGGGCCGCCggCAcGCGGCUUuucuGCg -3'
miRNA:   3'- -UGgACCUGGCGGagGU-CGCUGAGc---CG- -5'
10818 5' -61.1 NC_002794.1 + 111308 0.66 0.759616
Target:  5'- aGCCcgacGGAgaCGCCgggCCAGCGGCgCGGg -3'
miRNA:   3'- -UGGa---CCUg-GCGGa--GGUCGCUGaGCCg -5'
10818 5' -61.1 NC_002794.1 + 116156 0.66 0.759616
Target:  5'- gGCCUGcACCGCCUCCGugGGCagGGg -3'
miRNA:   3'- -UGGACcUGGCGGAGGUcgCUGagCCg -5'
10818 5' -61.1 NC_002794.1 + 126591 0.66 0.759616
Target:  5'- uACCgGGACugagCGCCgaggCCGGCGccgACgucgCGGCg -3'
miRNA:   3'- -UGGaCCUG----GCGGa---GGUCGC---UGa---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.