Results 61 - 80 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10818 | 5' | -61.1 | NC_002794.1 | + | 92312 | 0.67 | 0.703835 |
Target: 5'- -gCUGGGCgCGggcggcgggggcCCgggCgGGCGGCUCGGCg -3' miRNA: 3'- ugGACCUG-GC------------GGa--GgUCGCUGAGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 17979 | 0.67 | 0.713314 |
Target: 5'- aGCCUGGcGCCcacgGCCgCCGGCGAgUacuacgaggaCGGCg -3' miRNA: 3'- -UGGACC-UGG----CGGaGGUCGCUgA----------GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 147735 | 0.67 | 0.710476 |
Target: 5'- aGCCUGucguugacguGGCCGCUggagaguuuucugaUCCugAGCGACgCGGCg -3' miRNA: 3'- -UGGAC----------CUGGCGG--------------AGG--UCGCUGaGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 89450 | 0.68 | 0.65578 |
Target: 5'- cACCUaucGGAcgacCCGCggCUCCGGgGACUcCGGCc -3' miRNA: 3'- -UGGA---CCU----GGCG--GAGGUCgCUGA-GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 180737 | 0.68 | 0.646088 |
Target: 5'- ---cGGACgaCGCCgUCCGGCucCUCGGCg -3' miRNA: 3'- uggaCCUG--GCGG-AGGUCGcuGAGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 137642 | 0.68 | 0.65578 |
Target: 5'- uCCUGGcgggcGCCggGCCUCCGGCGccGCUgGuGCg -3' miRNA: 3'- uGGACC-----UGG--CGGAGGUCGC--UGAgC-CG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 141441 | 0.68 | 0.646088 |
Target: 5'- cGCCgGGGgCGCCgggAGCGGCgCGGCg -3' miRNA: 3'- -UGGaCCUgGCGGaggUCGCUGaGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 117598 | 0.68 | 0.646088 |
Target: 5'- gGCCUGG-CaCGCgUCCaggaacucgccgAGCGACagGGCg -3' miRNA: 3'- -UGGACCuG-GCGgAGG------------UCGCUGagCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 114846 | 0.68 | 0.645118 |
Target: 5'- gGCUcGGAggaccucCCGCCgcUCCAGCGcCUCGaGCa -3' miRNA: 3'- -UGGaCCU-------GGCGG--AGGUCGCuGAGC-CG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 142479 | 0.68 | 0.646088 |
Target: 5'- cACCgUGGACgcgugcggCGCCggCAGCGACgUGGCg -3' miRNA: 3'- -UGG-ACCUG--------GCGGagGUCGCUGaGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 66714 | 0.68 | 0.65578 |
Target: 5'- cGCCcGGcacgGCCGCCgccaccgCCGGCGGuggCGGCg -3' miRNA: 3'- -UGGaCC----UGGCGGa------GGUCGCUga-GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 105683 | 0.68 | 0.659652 |
Target: 5'- cGCCgGGAacgucggaaccgccgUCGCCUCCgcucgaGGCGAUcgCGGCg -3' miRNA: 3'- -UGGaCCU---------------GGCGGAGG------UCGCUGa-GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 152423 | 0.68 | 0.65578 |
Target: 5'- uGCCccGGGCCGUCUgUCGGCaGCUgGGCu -3' miRNA: 3'- -UGGa-CCUGGCGGA-GGUCGcUGAgCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 151338 | 0.68 | 0.665454 |
Target: 5'- uCCUccGcGACCGCCUgCAacuCGGCUUGGCg -3' miRNA: 3'- uGGA--C-CUGGCGGAgGUc--GCUGAGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 156204 | 0.68 | 0.665454 |
Target: 5'- cGCCggucggaGGGCCGgCgacuccgCCGGCGGCUCcGCg -3' miRNA: 3'- -UGGa------CCUGGCgGa------GGUCGCUGAGcCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 37739 | 0.68 | 0.665454 |
Target: 5'- ---cGGcGCCGCCggCGGCGGCgCGGCg -3' miRNA: 3'- uggaCC-UGGCGGagGUCGCUGaGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 70218 | 0.68 | 0.665454 |
Target: 5'- cGCCcGGACgGUCgggCgGGCGGC-CGGCc -3' miRNA: 3'- -UGGaCCUGgCGGa--GgUCGCUGaGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 37934 | 0.68 | 0.665454 |
Target: 5'- cGCC-GcGGCCGCCcgugCCucGGCGACucgcUCGGCg -3' miRNA: 3'- -UGGaC-CUGGCGGa---GG--UCGCUG----AGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 191907 | 0.68 | 0.665454 |
Target: 5'- cACCgGGACCGgCUgaaUCGGCGAagacgagaggaUCGGCg -3' miRNA: 3'- -UGGaCCUGGCgGA---GGUCGCUg----------AGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 59895 | 0.68 | 0.636387 |
Target: 5'- cACCUGcGCCGCgUgCgCAGCGACaUgGGCg -3' miRNA: 3'- -UGGACcUGGCGgA-G-GUCGCUG-AgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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