miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 64564 1.11 0.001034
Target:  5'- cACCUGGACCGCCUCCAGCGACUCGGCa -3'
miRNA:   3'- -UGGACCUGGCGGAGGUCGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 121959 0.8 0.140506
Target:  5'- cGCCUGGAgCG-CUCCGuGCGGCUCGGUc -3'
miRNA:   3'- -UGGACCUgGCgGAGGU-CGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 80424 0.8 0.133792
Target:  5'- cGCCgggcgGGGCCGCCgCCGGCGGCcgccggcccgUCGGCg -3'
miRNA:   3'- -UGGa----CCUGGCGGaGGUCGCUG----------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 120850 0.78 0.196722
Target:  5'- cCCUGcgcGGCCGUCgUCCAGCGcCUCGGCu -3'
miRNA:   3'- uGGAC---CUGGCGG-AGGUCGCuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 116893 0.76 0.242517
Target:  5'- cGCC-GGcGCCGUCUCCGGCGGC-CGGUc -3'
miRNA:   3'- -UGGaCC-UGGCGGAGGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 106954 0.76 0.242517
Target:  5'- cGCCUGGAgacacgcgUCGCCUCgcgCGGCGGC-CGGCa -3'
miRNA:   3'- -UGGACCU--------GGCGGAG---GUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 71567 0.76 0.236476
Target:  5'- cACCUGGGCgauccgguacacgCGCUUCCAcuGCGGCUgGGCg -3'
miRNA:   3'- -UGGACCUG-------------GCGGAGGU--CGCUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 83975 0.75 0.29685
Target:  5'- cGCCUGGACCGCCgcgaacaccgCCA-CGACg-GGCa -3'
miRNA:   3'- -UGGACCUGGCGGa---------GGUcGCUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 65911 0.75 0.296197
Target:  5'- gACCUuGACCGUCgucgCCGGCGGCgguggcgUCGGCg -3'
miRNA:   3'- -UGGAcCUGGCGGa---GGUCGCUG-------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 113079 0.75 0.284008
Target:  5'- uCCUGGAgCGCCU-CGGCGAacggCGGCg -3'
miRNA:   3'- uGGACCUgGCGGAgGUCGCUga--GCCG- -5'
10818 5' -61.1 NC_002794.1 + 126076 0.75 0.290373
Target:  5'- gGCCUGGACCgGCCUgCGGCcGACcgacUGGCu -3'
miRNA:   3'- -UGGACCUGG-CGGAgGUCG-CUGa---GCCG- -5'
10818 5' -61.1 NC_002794.1 + 114962 0.74 0.323876
Target:  5'- ---gGGACCGCCg-CAGCaGCUCGGCg -3'
miRNA:   3'- uggaCCUGGCGGagGUCGcUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 86898 0.74 0.316952
Target:  5'- cCCggcgGGGCCGCCgacCCGGUGACgcccgUGGCg -3'
miRNA:   3'- uGGa---CCUGGCGGa--GGUCGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 151635 0.74 0.338061
Target:  5'- cACUUGGcucGCCGCCggCCGGC-ACUUGGCu -3'
miRNA:   3'- -UGGACC---UGGCGGa-GGUCGcUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 100299 0.74 0.303439
Target:  5'- -gCUGGuGCCGCCUCCGccgcuggcacgcGCGGC-CGGCg -3'
miRNA:   3'- ugGACC-UGGCGGAGGU------------CGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 115826 0.74 0.330913
Target:  5'- cGCCUGGAUCGgCggggcCCGGCGgGCUCGGg -3'
miRNA:   3'- -UGGACCUGGCgGa----GGUCGC-UGAGCCg -5'
10818 5' -61.1 NC_002794.1 + 48903 0.73 0.375469
Target:  5'- uGCCgcagcucgGGGCCGCUccgcagcgCCAGCGccaggcGCUCGGCg -3'
miRNA:   3'- -UGGa-------CCUGGCGGa-------GGUCGC------UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 58625 0.73 0.360175
Target:  5'- gACCUGGugCGCCUgaucgCCAcGCaGCUgGGCg -3'
miRNA:   3'- -UGGACCugGCGGA-----GGU-CGcUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 71382 0.73 0.367767
Target:  5'- cCCaGGACCuCCUCCAcggucuGCGGCUCGGg -3'
miRNA:   3'- uGGaCCUGGcGGAGGU------CGCUGAGCCg -5'
10818 5' -61.1 NC_002794.1 + 187208 0.73 0.360175
Target:  5'- cACCccGACCaUCUCCAGCGGCUcCGGCu -3'
miRNA:   3'- -UGGacCUGGcGGAGGUCGCUGA-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.