miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 134689 0.7 0.540257
Target:  5'- cGCUUGGcucgACCGCCUCUGGgGGC-CGGa -3'
miRNA:   3'- -UGGACC----UGGCGGAGGUCgCUGaGCCg -5'
10818 5' -61.1 NC_002794.1 + 103941 0.7 0.540257
Target:  5'- cGCgUGGccGCCGCCgcucgCCAGCcGC-CGGCg -3'
miRNA:   3'- -UGgACC--UGGCGGa----GGUCGcUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 149695 0.7 0.530861
Target:  5'- gGCCgcggGGGCCGCCU--GGCGGgUgGGCc -3'
miRNA:   3'- -UGGa---CCUGGCGGAggUCGCUgAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 148594 0.7 0.512254
Target:  5'- gGCC-GG-CCGCCgUCCAcgGACUCGGCc -3'
miRNA:   3'- -UGGaCCuGGCGG-AGGUcgCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 76812 0.7 0.503051
Target:  5'- cACC-GGACCGgaCgucacgCCAGCGGC-CGGCg -3'
miRNA:   3'- -UGGaCCUGGCg-Ga-----GGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 33577 0.7 0.530861
Target:  5'- gACCagguggUGGACCGCCUgCGGCGGa-CGcGCa -3'
miRNA:   3'- -UGG------ACCUGGCGGAgGUCGCUgaGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 62114 0.7 0.530861
Target:  5'- gUCUGGugCGUgUCgAGCGACcgccaCGGCg -3'
miRNA:   3'- uGGACCugGCGgAGgUCGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 75363 0.7 0.549709
Target:  5'- cGCCaccGAcCCGCCgcggCCGGCGGCggCGGCc -3'
miRNA:   3'- -UGGac-CU-GGCGGa---GGUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 137586 0.7 0.549709
Target:  5'- gGCCggagugcggGGAgCCGCCgCCGGCGGucgCGGCg -3'
miRNA:   3'- -UGGa--------CCU-GGCGGaGGUCGCUga-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 69732 0.7 0.540257
Target:  5'- uGCCgccGGAgCGCCacggCCGGCGACgccgCGGg -3'
miRNA:   3'- -UGGa--CCUgGCGGa---GGUCGCUGa---GCCg -5'
10818 5' -61.1 NC_002794.1 + 184601 0.69 0.607292
Target:  5'- gGCCgcgGGAUCGgCaacggCCAGCGGCagcguccacgaUCGGCg -3'
miRNA:   3'- -UGGa--CCUGGCgGa----GGUCGCUG-----------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 87020 0.69 0.607292
Target:  5'- gGCgaGGGuCCGCaggaUCCGGgGAC-CGGCg -3'
miRNA:   3'- -UGgaCCU-GGCGg---AGGUCgCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 187448 0.69 0.597618
Target:  5'- cGCCgucuGCCGCCgCuCGGCGucGCUCGGCg -3'
miRNA:   3'- -UGGacc-UGGCGGaG-GUCGC--UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 58361 0.69 0.578345
Target:  5'- gGCCUGGcGCCGCCcgacuUCCAGgaGGCgcgCGGg -3'
miRNA:   3'- -UGGACC-UGGCGG-----AGGUCg-CUGa--GCCg -5'
10818 5' -61.1 NC_002794.1 + 189024 0.69 0.607292
Target:  5'- gGCCaGGAgCCGCUcgaccgCCAGCGGCg-GGCu -3'
miRNA:   3'- -UGGaCCU-GGCGGa-----GGUCGCUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 112322 0.69 0.578345
Target:  5'- cGCCgacggcggGGAgCgCGCCggCCGGCGGCgccggCGGCg -3'
miRNA:   3'- -UGGa-------CCU-G-GCGGa-GGUCGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 111616 0.69 0.607292
Target:  5'- gGCCggcgGGGCCGCCgcggccgccgCCGGUcgGGCgccgCGGCc -3'
miRNA:   3'- -UGGa---CCUGGCGGa---------GGUCG--CUGa---GCCG- -5'
10818 5' -61.1 NC_002794.1 + 79024 0.69 0.597618
Target:  5'- cCCUcGGCCGCCUUCuGCcGGCcCGGCc -3'
miRNA:   3'- uGGAcCUGGCGGAGGuCG-CUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 90470 0.69 0.559211
Target:  5'- gGCCgcgcgcggcgGGGCCGCCgUCCcGCGcgaUCGGCc -3'
miRNA:   3'- -UGGa---------CCUGGCGG-AGGuCGCug-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 49388 0.69 0.559211
Target:  5'- cGCCaGGccGCCGCCgucggCCacGGCGGCcgCGGCg -3'
miRNA:   3'- -UGGaCC--UGGCGGa----GG--UCGCUGa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.