miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 48903 0.73 0.375469
Target:  5'- uGCCgcagcucgGGGCCGCUccgcagcgCCAGCGccaggcGCUCGGCg -3'
miRNA:   3'- -UGGa-------CCUGGCGGa-------GGUCGC------UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 70858 0.72 0.391195
Target:  5'- uGCC-GG-CCuCCUCCGGCGGCggcagCGGCg -3'
miRNA:   3'- -UGGaCCuGGcGGAGGUCGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 24004 0.72 0.391195
Target:  5'- uCCgacGGGCCGCCgucaCCgcGGCGcCUCGGCg -3'
miRNA:   3'- uGGa--CCUGGCGGa---GG--UCGCuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 191660 0.72 0.391195
Target:  5'- cGCCgggGGACggCGCCggCAGCGGCggCGGCg -3'
miRNA:   3'- -UGGa--CCUG--GCGGagGUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 186962 0.72 0.399218
Target:  5'- -gCUGGccGCCGCCUCCAGCaGCgCGcGCa -3'
miRNA:   3'- ugGACC--UGGCGGAGGUCGcUGaGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 114747 0.72 0.423907
Target:  5'- aGCC-GGcGCCGCCcgCCGGCGccggucCUCGGCg -3'
miRNA:   3'- -UGGaCC-UGGCGGa-GGUCGCu-----GAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 142090 0.72 0.431489
Target:  5'- gGCC-GGaauuuccgaacaaGCCGCCUCCuucucuGCGACcCGGCg -3'
miRNA:   3'- -UGGaCC-------------UGGCGGAGGu-----CGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 56320 0.72 0.432337
Target:  5'- -gCUGG-CgGCCguggCCGGCGACgCGGCg -3'
miRNA:   3'- ugGACCuGgCGGa---GGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 58015 0.71 0.455576
Target:  5'- cGCCgGGGCCGCCgCCGGCGaacccgccGCgccgcccguccccgUCGGCg -3'
miRNA:   3'- -UGGaCCUGGCGGaGGUCGC--------UG--------------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 107162 0.71 0.4582
Target:  5'- gGCgaGGGCCGCCgCUAcGCGGCggagcCGGCg -3'
miRNA:   3'- -UGgaCCUGGCGGaGGU-CGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 125748 0.71 0.4582
Target:  5'- gGCCgcgGGACgGCggCCGGCGGCUCGcCa -3'
miRNA:   3'- -UGGa--CCUGgCGgaGGUCGCUGAGCcG- -5'
10818 5' -61.1 NC_002794.1 + 40832 0.71 0.47055
Target:  5'- gACC-GGugCGCCUgccgaccucgcgcucCCAGCGAUUCaGCa -3'
miRNA:   3'- -UGGaCCugGCGGA---------------GGUCGCUGAGcCG- -5'
10818 5' -61.1 NC_002794.1 + 101258 0.71 0.475894
Target:  5'- aGCgggGGGCCGCCcccggcgCCGGUGGCggCGGCg -3'
miRNA:   3'- -UGga-CCUGGCGGa------GGUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 137422 0.71 0.475894
Target:  5'- cGCCgcgGaGACCGCg-CCGGCGcucuggaacgACUCGGCg -3'
miRNA:   3'- -UGGa--C-CUGGCGgaGGUCGC----------UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 44241 0.71 0.484868
Target:  5'- uGCC-GGGCgGCUcggugCCgGGCGGCUCGGCc -3'
miRNA:   3'- -UGGaCCUGgCGGa----GG-UCGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 131665 0.71 0.493921
Target:  5'- uGCCUGuGACCGCCgacUCAGCGg--CGGUc -3'
miRNA:   3'- -UGGAC-CUGGCGGa--GGUCGCugaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 112237 0.71 0.497564
Target:  5'- uCCaGGGCCGCCgcgaacgccgCCGGCGGgaccggcgucucgucCUCGGCc -3'
miRNA:   3'- uGGaCCUGGCGGa---------GGUCGCU---------------GAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 76812 0.7 0.503051
Target:  5'- cACC-GGACCGgaCgucacgCCAGCGGC-CGGCg -3'
miRNA:   3'- -UGGaCCUGGCg-Ga-----GGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 148594 0.7 0.512254
Target:  5'- gGCC-GG-CCGCCgUCCAcgGACUCGGCc -3'
miRNA:   3'- -UGGaCCuGGCGG-AGGUcgCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 119701 0.7 0.521525
Target:  5'- -gCUGGGCCGgCggccacaaCGGCGGCuUCGGCa -3'
miRNA:   3'- ugGACCUGGCgGag------GUCGCUG-AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.