Results 41 - 60 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10818 | 5' | -61.1 | NC_002794.1 | + | 33577 | 0.7 | 0.530861 |
Target: 5'- gACCagguggUGGACCGCCUgCGGCGGa-CGcGCa -3' miRNA: 3'- -UGG------ACCUGGCGGAgGUCGCUgaGC-CG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 62114 | 0.7 | 0.530861 |
Target: 5'- gUCUGGugCGUgUCgAGCGACcgccaCGGCg -3' miRNA: 3'- uGGACCugGCGgAGgUCGCUGa----GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 149695 | 0.7 | 0.530861 |
Target: 5'- gGCCgcggGGGCCGCCU--GGCGGgUgGGCc -3' miRNA: 3'- -UGGa---CCUGGCGGAggUCGCUgAgCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 103941 | 0.7 | 0.540257 |
Target: 5'- cGCgUGGccGCCGCCgcucgCCAGCcGC-CGGCg -3' miRNA: 3'- -UGgACC--UGGCGGa----GGUCGcUGaGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 134689 | 0.7 | 0.540257 |
Target: 5'- cGCUUGGcucgACCGCCUCUGGgGGC-CGGa -3' miRNA: 3'- -UGGACC----UGGCGGAGGUCgCUGaGCCg -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 119764 | 0.7 | 0.540257 |
Target: 5'- gACCaGGucgcgGCCgGCCUCCAgGCGGCUcCGGUc -3' miRNA: 3'- -UGGaCC-----UGG-CGGAGGU-CGCUGA-GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 18684 | 0.7 | 0.540257 |
Target: 5'- uGCCgccGCCGUCUCCGGCacGGCggCGGCg -3' miRNA: 3'- -UGGaccUGGCGGAGGUCG--CUGa-GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 69732 | 0.7 | 0.540257 |
Target: 5'- uGCCgccGGAgCGCCacggCCGGCGACgccgCGGg -3' miRNA: 3'- -UGGa--CCUgGCGGa---GGUCGCUGa---GCCg -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 75363 | 0.7 | 0.549709 |
Target: 5'- cGCCaccGAcCCGCCgcggCCGGCGGCggCGGCc -3' miRNA: 3'- -UGGac-CU-GGCGGa---GGUCGCUGa-GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 137586 | 0.7 | 0.549709 |
Target: 5'- gGCCggagugcggGGAgCCGCCgCCGGCGGucgCGGCg -3' miRNA: 3'- -UGGa--------CCU-GGCGGaGGUCGCUga-GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 49388 | 0.69 | 0.559211 |
Target: 5'- cGCCaGGccGCCGCCgucggCCacGGCGGCcgCGGCg -3' miRNA: 3'- -UGGaCC--UGGCGGa----GG--UCGCUGa-GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 90470 | 0.69 | 0.559211 |
Target: 5'- gGCCgcgcgcggcgGGGCCGCCgUCCcGCGcgaUCGGCc -3' miRNA: 3'- -UGGa---------CCUGGCGG-AGGuCGCug-AGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 92759 | 0.69 | 0.568758 |
Target: 5'- cAUCUGcGgCGCCUucgCCAGCaACUCGGCg -3' miRNA: 3'- -UGGACcUgGCGGA---GGUCGcUGAGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 113562 | 0.69 | 0.568758 |
Target: 5'- cGCC-GGACCGUCU---GCGuCUCGGCg -3' miRNA: 3'- -UGGaCCUGGCGGAgguCGCuGAGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 146968 | 0.69 | 0.568758 |
Target: 5'- --aUGGACCGCCUgUcGCGAggUCGGCg -3' miRNA: 3'- uggACCUGGCGGAgGuCGCUg-AGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 58361 | 0.69 | 0.578345 |
Target: 5'- gGCCUGGcGCCGCCcgacuUCCAGgaGGCgcgCGGg -3' miRNA: 3'- -UGGACC-UGGCGG-----AGGUCg-CUGa--GCCg -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 112322 | 0.69 | 0.578345 |
Target: 5'- cGCCgacggcggGGAgCgCGCCggCCGGCGGCgccggCGGCg -3' miRNA: 3'- -UGGa-------CCU-G-GCGGa-GGUCGCUGa----GCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 114505 | 0.69 | 0.587967 |
Target: 5'- cGCC-GGACCGUC-CCggAGCGAgUCGaGCg -3' miRNA: 3'- -UGGaCCUGGCGGaGG--UCGCUgAGC-CG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 187448 | 0.69 | 0.597618 |
Target: 5'- cGCCgucuGCCGCCgCuCGGCGucGCUCGGCg -3' miRNA: 3'- -UGGacc-UGGCGGaG-GUCGC--UGAGCCG- -5' |
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10818 | 5' | -61.1 | NC_002794.1 | + | 79024 | 0.69 | 0.597618 |
Target: 5'- cCCUcGGCCGCCUUCuGCcGGCcCGGCc -3' miRNA: 3'- uGGAcCUGGCGGAGGuCG-CUGaGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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