miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 116156 0.66 0.759616
Target:  5'- gGCCUGcACCGCCUCCGugGGCagGGg -3'
miRNA:   3'- -UGGACcUGGCGGAGGUcgCUGagCCg -5'
10818 5' -61.1 NC_002794.1 + 180682 0.66 0.759616
Target:  5'- cGCC-GG-CCGCUcCCGGCGcC-CGGCg -3'
miRNA:   3'- -UGGaCCuGGCGGaGGUCGCuGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 37800 0.66 0.7569
Target:  5'- cGCCUcGAcgagacggucgcucCCGCCgUCaCGGCGACggCGGCu -3'
miRNA:   3'- -UGGAcCU--------------GGCGG-AG-GUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 35724 0.66 0.750527
Target:  5'- cACCUG----GCCUCCGGCGGC-CGcGCg -3'
miRNA:   3'- -UGGACcuggCGGAGGUCGCUGaGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 23958 0.66 0.750527
Target:  5'- cACUUGGcuCCGag-CCAGCGGCgaggcCGGCg -3'
miRNA:   3'- -UGGACCu-GGCggaGGUCGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 118676 0.66 0.750527
Target:  5'- cGCCcGcGGCCGCCgCCGGCGGCa--GCg -3'
miRNA:   3'- -UGGaC-CUGGCGGaGGUCGCUGagcCG- -5'
10818 5' -61.1 NC_002794.1 + 4007 0.66 0.750527
Target:  5'- cGCCUcuucaucgucGGAgcaCCGCCccaUCCcgAGCGAC-CGGCa -3'
miRNA:   3'- -UGGA----------CCU---GGCGG---AGG--UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 75267 0.66 0.750527
Target:  5'- gACCcGGcuccACCGCCcacCCGGcCGGC-CGGCg -3'
miRNA:   3'- -UGGaCC----UGGCGGa--GGUC-GCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 100787 0.66 0.747782
Target:  5'- cGCCUGcgguucgcGGCCGCUUCUgcgccuacgugccgGGCGGCgggggcCGGCa -3'
miRNA:   3'- -UGGAC--------CUGGCGGAGG--------------UCGCUGa-----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 113507 0.66 0.741345
Target:  5'- gGCCgagaGCCGCggagggagCUCCGcCGGCUCGGCg -3'
miRNA:   3'- -UGGacc-UGGCG--------GAGGUcGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 184564 0.66 0.741345
Target:  5'- cGCCUcacGcGCCGCCg-CGGCGGCggCGGCc -3'
miRNA:   3'- -UGGA---CcUGGCGGagGUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 83355 0.66 0.741345
Target:  5'- aACCUGG-CCaGCCUCCcGUGucuGCUCcagGGCc -3'
miRNA:   3'- -UGGACCuGG-CGGAGGuCGC---UGAG---CCG- -5'
10818 5' -61.1 NC_002794.1 + 53827 0.66 0.741345
Target:  5'- aGCCUcGGCgggaGCCUCgacgGGCGuCUCGGCg -3'
miRNA:   3'- -UGGAcCUGg---CGGAGg---UCGCuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 34258 0.66 0.735793
Target:  5'- cGCCgcaggcGGACCGCgCgcaggcggccagcgCCAGCGAC-CGGg -3'
miRNA:   3'- -UGGa-----CCUGGCG-Ga-------------GGUCGCUGaGCCg -5'
10818 5' -61.1 NC_002794.1 + 78676 0.66 0.732076
Target:  5'- cACCUcGGCCGCCggCCGcauguGCGGCcgacaCGGCg -3'
miRNA:   3'- -UGGAcCUGGCGGa-GGU-----CGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 116646 0.66 0.732076
Target:  5'- gGCCcGGccguCCGgCUCUugaGGCGcuGCUCGGCg -3'
miRNA:   3'- -UGGaCCu---GGCgGAGG---UCGC--UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 63918 0.66 0.732076
Target:  5'- cGCC-GcGACCGCCgcccggCCGGCGAguCUCGaGUc -3'
miRNA:   3'- -UGGaC-CUGGCGGa-----GGUCGCU--GAGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 114694 0.66 0.732076
Target:  5'- gGCCcGGACCuCCUgcgagacggaCGGCGGCggCGGCg -3'
miRNA:   3'- -UGGaCCUGGcGGAg---------GUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 61816 0.66 0.732076
Target:  5'- cAUCUccGGCgGCCgCCGGCGGC-CGGCg -3'
miRNA:   3'- -UGGAc-CUGgCGGaGGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 53609 0.66 0.732076
Target:  5'- cACC-GGGCCGCCg-CAGCGucggacggacgaGgUCGGCc -3'
miRNA:   3'- -UGGaCCUGGCGGagGUCGC------------UgAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.