miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 141649 0.66 0.732076
Target:  5'- gGCgUGGccGCgGCCgCCGGCGGgUCGaGCg -3'
miRNA:   3'- -UGgACC--UGgCGGaGGUCGCUgAGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 99445 0.67 0.72273
Target:  5'- gACC-GGAuCCGCCgCCGGgGguaUCGGCg -3'
miRNA:   3'- -UGGaCCU-GGCGGaGGUCgCug-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 124905 0.67 0.72273
Target:  5'- -gCUGGuCCGCgagaCCGGCGAgucCUCGGUg -3'
miRNA:   3'- ugGACCuGGCGga--GGUCGCU---GAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 95867 0.67 0.713314
Target:  5'- ---cGGGCCGUUUCaguguGGCGACcCGGCg -3'
miRNA:   3'- uggaCCUGGCGGAGg----UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 83948 0.67 0.713314
Target:  5'- cGCCUGGACCGCC-UgGGCcGCcUGGa -3'
miRNA:   3'- -UGGACCUGGCGGaGgUCGcUGaGCCg -5'
10818 5' -61.1 NC_002794.1 + 194462 0.67 0.713314
Target:  5'- aACCaguaGCCGCgCUCCAGCGGCUCc-- -3'
miRNA:   3'- -UGGacc-UGGCG-GAGGUCGCUGAGccg -5'
10818 5' -61.1 NC_002794.1 + 17979 0.67 0.713314
Target:  5'- aGCCUGGcGCCcacgGCCgCCGGCGAgUacuacgaggaCGGCg -3'
miRNA:   3'- -UGGACC-UGG----CGGaGGUCGCUgA----------GCCG- -5'
10818 5' -61.1 NC_002794.1 + 147735 0.67 0.710476
Target:  5'- aGCCUGucguugacguGGCCGCUggagaguuuucugaUCCugAGCGACgCGGCg -3'
miRNA:   3'- -UGGAC----------CUGGCGG--------------AGG--UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 41243 0.67 0.703835
Target:  5'- cGCC-GcGGCCGCCgacgCCGGCGGCccgucgUCGcGCu -3'
miRNA:   3'- -UGGaC-CUGGCGGa---GGUCGCUG------AGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 92312 0.67 0.703835
Target:  5'- -gCUGGGCgCGggcggcgggggcCCgggCgGGCGGCUCGGCg -3'
miRNA:   3'- ugGACCUG-GC------------GGa--GgUCGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 138459 0.67 0.703835
Target:  5'- gGCCUGcgacguggacguGACCGUCUCguCGGCGGuCcCGGCg -3'
miRNA:   3'- -UGGAC------------CUGGCGGAG--GUCGCU-GaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 51933 0.67 0.700981
Target:  5'- uACCUGGAccccgcguucacguCCaacaagaagGCCUCCGG-GAC-CGGCa -3'
miRNA:   3'- -UGGACCU--------------GG---------CGGAGGUCgCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 58708 0.67 0.694303
Target:  5'- -gCUGGugCGCUUCCugcaccGCGuCUCGcGCc -3'
miRNA:   3'- ugGACCugGCGGAGGu-----CGCuGAGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 34772 0.67 0.694303
Target:  5'- gGCac-GGCCGCCcgcgCCAGcCGAgUCGGCc -3'
miRNA:   3'- -UGgacCUGGCGGa---GGUC-GCUgAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 2802 0.67 0.694303
Target:  5'- aACCUGGA-CGCC-CC-GUGACUCaaGGUg -3'
miRNA:   3'- -UGGACCUgGCGGaGGuCGCUGAG--CCG- -5'
10818 5' -61.1 NC_002794.1 + 194011 0.67 0.694303
Target:  5'- cGCCUucGcGGCCGCCgccgCCGGCGcCUCGcccGCc -3'
miRNA:   3'- -UGGA--C-CUGGCGGa---GGUCGCuGAGC---CG- -5'
10818 5' -61.1 NC_002794.1 + 116702 0.67 0.694303
Target:  5'- gGCCUccaGcACCGCgUCgAGCGuCUCGGUg -3'
miRNA:   3'- -UGGA---CcUGGCGgAGgUCGCuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 99750 0.67 0.693346
Target:  5'- gACCUGGucuggccgacguuGCCGCCgCCcGCGguGC-CGGCg -3'
miRNA:   3'- -UGGACC-------------UGGCGGaGGuCGC--UGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 186276 0.67 0.684723
Target:  5'- cGCCUGGcgcggcggcACCGCggCCAgGCGGC-CGGUc -3'
miRNA:   3'- -UGGACC---------UGGCGgaGGU-CGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 14765 0.67 0.684723
Target:  5'- aGCCgucGaGGCCGCUgaggCCGGCGAggcCGGCg -3'
miRNA:   3'- -UGGa--C-CUGGCGGa---GGUCGCUga-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.