miRNA display CGI


Results 61 - 80 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 68761 0.67 0.675104
Target:  5'- aGCC-GGGCCGCCggggcgCCGGaCGcC-CGGCu -3'
miRNA:   3'- -UGGaCCUGGCGGa-----GGUC-GCuGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 17944 0.67 0.675104
Target:  5'- gACCUGG-CgGCCaCCcGCGACUCgcccgGGCc -3'
miRNA:   3'- -UGGACCuGgCGGaGGuCGCUGAG-----CCG- -5'
10818 5' -61.1 NC_002794.1 + 51361 0.67 0.675104
Target:  5'- cGCCcgagGcGGCCGCCccguccggCCGGCGACa-GGCg -3'
miRNA:   3'- -UGGa---C-CUGGCGGa-------GGUCGCUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 151338 0.68 0.665454
Target:  5'- uCCUccGcGACCGCCUgCAacuCGGCUUGGCg -3'
miRNA:   3'- uGGA--C-CUGGCGGAgGUc--GCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 156204 0.68 0.665454
Target:  5'- cGCCggucggaGGGCCGgCgacuccgCCGGCGGCUCcGCg -3'
miRNA:   3'- -UGGa------CCUGGCgGa------GGUCGCUGAGcCG- -5'
10818 5' -61.1 NC_002794.1 + 37739 0.68 0.665454
Target:  5'- ---cGGcGCCGCCggCGGCGGCgCGGCg -3'
miRNA:   3'- uggaCC-UGGCGGagGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 70218 0.68 0.665454
Target:  5'- cGCCcGGACgGUCgggCgGGCGGC-CGGCc -3'
miRNA:   3'- -UGGaCCUGgCGGa--GgUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 37934 0.68 0.665454
Target:  5'- cGCC-GcGGCCGCCcgugCCucGGCGACucgcUCGGCg -3'
miRNA:   3'- -UGGaC-CUGGCGGa---GG--UCGCUG----AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 191907 0.68 0.665454
Target:  5'- cACCgGGACCGgCUgaaUCGGCGAagacgagaggaUCGGCg -3'
miRNA:   3'- -UGGaCCUGGCgGA---GGUCGCUg----------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 123215 0.68 0.665454
Target:  5'- gACCUGuacAUCGUCUCgAGCGGCcUGGCc -3'
miRNA:   3'- -UGGACc--UGGCGGAGgUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 105683 0.68 0.659652
Target:  5'- cGCCgGGAacgucggaaccgccgUCGCCUCCgcucgaGGCGAUcgCGGCg -3'
miRNA:   3'- -UGGaCCU---------------GGCGGAGG------UCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 137642 0.68 0.65578
Target:  5'- uCCUGGcgggcGCCggGCCUCCGGCGccGCUgGuGCg -3'
miRNA:   3'- uGGACC-----UGG--CGGAGGUCGC--UGAgC-CG- -5'
10818 5' -61.1 NC_002794.1 + 89450 0.68 0.65578
Target:  5'- cACCUaucGGAcgacCCGCggCUCCGGgGACUcCGGCc -3'
miRNA:   3'- -UGGA---CCU----GGCG--GAGGUCgCUGA-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 66714 0.68 0.65578
Target:  5'- cGCCcGGcacgGCCGCCgccaccgCCGGCGGuggCGGCg -3'
miRNA:   3'- -UGGaCC----UGGCGGa------GGUCGCUga-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 152423 0.68 0.65578
Target:  5'- uGCCccGGGCCGUCUgUCGGCaGCUgGGCu -3'
miRNA:   3'- -UGGa-CCUGGCGGA-GGUCGcUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 142479 0.68 0.646088
Target:  5'- cACCgUGGACgcgugcggCGCCggCAGCGACgUGGCg -3'
miRNA:   3'- -UGG-ACCUG--------GCGGagGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 117598 0.68 0.646088
Target:  5'- gGCCUGG-CaCGCgUCCaggaacucgccgAGCGACagGGCg -3'
miRNA:   3'- -UGGACCuG-GCGgAGG------------UCGCUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 141441 0.68 0.646088
Target:  5'- cGCCgGGGgCGCCgggAGCGGCgCGGCg -3'
miRNA:   3'- -UGGaCCUgGCGGaggUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 180737 0.68 0.646088
Target:  5'- ---cGGACgaCGCCgUCCGGCucCUCGGCg -3'
miRNA:   3'- uggaCCUG--GCGG-AGGUCGcuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 114846 0.68 0.645118
Target:  5'- gGCUcGGAggaccucCCGCCgcUCCAGCGcCUCGaGCa -3'
miRNA:   3'- -UGGaCCU-------GGCGG--AGGUCGCuGAGC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.