miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 23641 0.68 0.636387
Target:  5'- cCCUcGACCcCCUCCgccccccgAGCGAC-CGGCg -3'
miRNA:   3'- uGGAcCUGGcGGAGG--------UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 91675 0.68 0.636387
Target:  5'- cACgUGGGCgCGCugguCUUCAGCGgcaACUCGGUg -3'
miRNA:   3'- -UGgACCUG-GCG----GAGGUCGC---UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 59895 0.68 0.636387
Target:  5'- cACCUGcGCCGCgUgCgCAGCGACaUgGGCg -3'
miRNA:   3'- -UGGACcUGGCGgA-G-GUCGCUG-AgCCG- -5'
10818 5' -61.1 NC_002794.1 + 102627 0.68 0.626683
Target:  5'- cACCUGGcggucauCCGCCggCUGGCGgcgcGCUCGGa -3'
miRNA:   3'- -UGGACCu------GGCGGa-GGUCGC----UGAGCCg -5'
10818 5' -61.1 NC_002794.1 + 111112 0.68 0.626683
Target:  5'- gACCgUGG-CCGUCgacggcgCCGGCGGC-CGGUg -3'
miRNA:   3'- -UGG-ACCuGGCGGa------GGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 43806 0.68 0.626683
Target:  5'- cGCCgcuccGGGCCcagGCuCUCCAGCGAg-UGGCa -3'
miRNA:   3'- -UGGa----CCUGG---CG-GAGGUCGCUgaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 46758 0.68 0.625712
Target:  5'- -gCUGGAUCGacggcgacuucgaCC-CCAGCGGCggCGGCg -3'
miRNA:   3'- ugGACCUGGC-------------GGaGGUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 21498 0.68 0.616982
Target:  5'- aGCCUccGACCGUCUCCGGCucgagGACg-GGCg -3'
miRNA:   3'- -UGGAc-CUGGCGGAGGUCG-----CUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 8114 0.68 0.616982
Target:  5'- cACCgagcgGGcgGCgGCCUCCucGGUGAC-CGGCg -3'
miRNA:   3'- -UGGa----CC--UGgCGGAGG--UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 121248 0.68 0.616982
Target:  5'- uGCCgccGCCGCCgCC-GCGGCcUCGGCa -3'
miRNA:   3'- -UGGaccUGGCGGaGGuCGCUG-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 44705 0.68 0.616982
Target:  5'- cGCCcGG-CCGCgaCCgcGGCGACgUCGGCc -3'
miRNA:   3'- -UGGaCCuGGCGgaGG--UCGCUG-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 138937 0.68 0.616982
Target:  5'- uGCC-GGugCGCCcCCAccguggcgugcuGCGACgCGGCg -3'
miRNA:   3'- -UGGaCCugGCGGaGGU------------CGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 121389 0.68 0.616982
Target:  5'- cGCCgGGACCGCggCCGGCG-C-CGGg -3'
miRNA:   3'- -UGGaCCUGGCGgaGGUCGCuGaGCCg -5'
10818 5' -61.1 NC_002794.1 + 111616 0.69 0.607292
Target:  5'- gGCCggcgGGGCCGCCgcggccgccgCCGGUcgGGCgccgCGGCc -3'
miRNA:   3'- -UGGa---CCUGGCGGa---------GGUCG--CUGa---GCCG- -5'
10818 5' -61.1 NC_002794.1 + 189024 0.69 0.607292
Target:  5'- gGCCaGGAgCCGCUcgaccgCCAGCGGCg-GGCu -3'
miRNA:   3'- -UGGaCCU-GGCGGa-----GGUCGCUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 87020 0.69 0.607292
Target:  5'- gGCgaGGGuCCGCaggaUCCGGgGAC-CGGCg -3'
miRNA:   3'- -UGgaCCU-GGCGg---AGGUCgCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 184601 0.69 0.607292
Target:  5'- gGCCgcgGGAUCGgCaacggCCAGCGGCagcguccacgaUCGGCg -3'
miRNA:   3'- -UGGa--CCUGGCgGa----GGUCGCUG-----------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 79024 0.69 0.597618
Target:  5'- cCCUcGGCCGCCUUCuGCcGGCcCGGCc -3'
miRNA:   3'- uGGAcCUGGCGGAGGuCG-CUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 187448 0.69 0.597618
Target:  5'- cGCCgucuGCCGCCgCuCGGCGucGCUCGGCg -3'
miRNA:   3'- -UGGacc-UGGCGGaG-GUCGC--UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 114505 0.69 0.587967
Target:  5'- cGCC-GGACCGUC-CCggAGCGAgUCGaGCg -3'
miRNA:   3'- -UGGaCCUGGCGGaGG--UCGCUgAGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.