miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 2802 0.67 0.694303
Target:  5'- aACCUGGA-CGCC-CC-GUGACUCaaGGUg -3'
miRNA:   3'- -UGGACCUgGCGGaGGuCGCUGAG--CCG- -5'
10818 5' -61.1 NC_002794.1 + 4007 0.66 0.750527
Target:  5'- cGCCUcuucaucgucGGAgcaCCGCCccaUCCcgAGCGAC-CGGCa -3'
miRNA:   3'- -UGGA----------CCU---GGCGG---AGG--UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 8114 0.68 0.616982
Target:  5'- cACCgagcgGGcgGCgGCCUCCucGGUGAC-CGGCg -3'
miRNA:   3'- -UGGa----CC--UGgCGGAGG--UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 12196 0.73 0.360175
Target:  5'- gGCCgGGcGCCGCUcggacgugCCGGCGGCgUCGGCg -3'
miRNA:   3'- -UGGaCC-UGGCGGa-------GGUCGCUG-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 12493 0.66 0.768604
Target:  5'- cACCUGcacguucccgaGCCGCUcgaCCGGCGGCUgGGUg -3'
miRNA:   3'- -UGGACc----------UGGCGGa--GGUCGCUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 14765 0.67 0.684723
Target:  5'- aGCCgucGaGGCCGCUgaggCCGGCGAggcCGGCg -3'
miRNA:   3'- -UGGa--C-CUGGCGGa---GGUCGCUga-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 16205 0.66 0.759616
Target:  5'- cGCCUGGGCacgGUCgaggUCCGGCGGgUCaGGUc -3'
miRNA:   3'- -UGGACCUGg--CGG----AGGUCGCUgAG-CCG- -5'
10818 5' -61.1 NC_002794.1 + 17944 0.67 0.675104
Target:  5'- gACCUGG-CgGCCaCCcGCGACUCgcccgGGCc -3'
miRNA:   3'- -UGGACCuGgCGGaGGuCGCUGAG-----CCG- -5'
10818 5' -61.1 NC_002794.1 + 17979 0.67 0.713314
Target:  5'- aGCCUGGcGCCcacgGCCgCCGGCGAgUacuacgaggaCGGCg -3'
miRNA:   3'- -UGGACC-UGG----CGGaGGUCGCUgA----------GCCG- -5'
10818 5' -61.1 NC_002794.1 + 18684 0.7 0.540257
Target:  5'- uGCCgccGCCGUCUCCGGCacGGCggCGGCg -3'
miRNA:   3'- -UGGaccUGGCGGAGGUCG--CUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 21498 0.68 0.616982
Target:  5'- aGCCUccGACCGUCUCCGGCucgagGACg-GGCg -3'
miRNA:   3'- -UGGAc-CUGGCGGAGGUCG-----CUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 23641 0.68 0.636387
Target:  5'- cCCUcGACCcCCUCCgccccccgAGCGAC-CGGCg -3'
miRNA:   3'- uGGAcCUGGcGGAGG--------UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 23958 0.66 0.750527
Target:  5'- cACUUGGcuCCGag-CCAGCGGCgaggcCGGCg -3'
miRNA:   3'- -UGGACCu-GGCggaGGUCGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 24004 0.72 0.391195
Target:  5'- uCCgacGGGCCGCCgucaCCgcGGCGcCUCGGCg -3'
miRNA:   3'- uGGa--CCUGGCGGa---GG--UCGCuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 29075 0.66 0.777483
Target:  5'- aACUccGACUGUgaCguGCGGCUCGGCu -3'
miRNA:   3'- -UGGacCUGGCGgaGguCGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 33577 0.7 0.530861
Target:  5'- gACCagguggUGGACCGCCUgCGGCGGa-CGcGCa -3'
miRNA:   3'- -UGG------ACCUGGCGGAgGUCGCUgaGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 34258 0.66 0.735793
Target:  5'- cGCCgcaggcGGACCGCgCgcaggcggccagcgCCAGCGAC-CGGg -3'
miRNA:   3'- -UGGa-----CCUGGCG-Ga-------------GGUCGCUGaGCCg -5'
10818 5' -61.1 NC_002794.1 + 34772 0.67 0.694303
Target:  5'- gGCac-GGCCGCCcgcgCCAGcCGAgUCGGCc -3'
miRNA:   3'- -UGgacCUGGCGGa---GGUC-GCUgAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 35724 0.66 0.750527
Target:  5'- cACCUG----GCCUCCGGCGGC-CGcGCg -3'
miRNA:   3'- -UGGACcuggCGGAGGUCGCUGaGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 37739 0.68 0.665454
Target:  5'- ---cGGcGCCGCCggCGGCGGCgCGGCg -3'
miRNA:   3'- uggaCC-UGGCGGagGUCGCUGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.