miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 37800 0.66 0.7569
Target:  5'- cGCCUcGAcgagacggucgcucCCGCCgUCaCGGCGACggCGGCu -3'
miRNA:   3'- -UGGAcCU--------------GGCGG-AG-GUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 37934 0.68 0.665454
Target:  5'- cGCC-GcGGCCGCCcgugCCucGGCGACucgcUCGGCg -3'
miRNA:   3'- -UGGaC-CUGGCGGa---GG--UCGCUG----AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 40832 0.71 0.47055
Target:  5'- gACC-GGugCGCCUgccgaccucgcgcucCCAGCGAUUCaGCa -3'
miRNA:   3'- -UGGaCCugGCGGA---------------GGUCGCUGAGcCG- -5'
10818 5' -61.1 NC_002794.1 + 41243 0.67 0.703835
Target:  5'- cGCC-GcGGCCGCCgacgCCGGCGGCccgucgUCGcGCu -3'
miRNA:   3'- -UGGaC-CUGGCGGa---GGUCGCUG------AGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 43806 0.68 0.626683
Target:  5'- cGCCgcuccGGGCCcagGCuCUCCAGCGAg-UGGCa -3'
miRNA:   3'- -UGGa----CCUGG---CG-GAGGUCGCUgaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 44241 0.71 0.484868
Target:  5'- uGCC-GGGCgGCUcggugCCgGGCGGCUCGGCc -3'
miRNA:   3'- -UGGaCCUGgCGGa----GG-UCGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 44705 0.68 0.616982
Target:  5'- cGCCcGG-CCGCgaCCgcGGCGACgUCGGCc -3'
miRNA:   3'- -UGGaCCuGGCGgaGG--UCGCUG-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 46758 0.68 0.625712
Target:  5'- -gCUGGAUCGacggcgacuucgaCC-CCAGCGGCggCGGCg -3'
miRNA:   3'- ugGACCUGGC-------------GGaGGUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 48903 0.73 0.375469
Target:  5'- uGCCgcagcucgGGGCCGCUccgcagcgCCAGCGccaggcGCUCGGCg -3'
miRNA:   3'- -UGGa-------CCUGGCGGa-------GGUCGC------UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 49388 0.69 0.559211
Target:  5'- cGCCaGGccGCCGCCgucggCCacGGCGGCcgCGGCg -3'
miRNA:   3'- -UGGaCC--UGGCGGa----GG--UCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 51361 0.67 0.675104
Target:  5'- cGCCcgagGcGGCCGCCccguccggCCGGCGACa-GGCg -3'
miRNA:   3'- -UGGa---C-CUGGCGGa-------GGUCGCUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 51933 0.67 0.700981
Target:  5'- uACCUGGAccccgcguucacguCCaacaagaagGCCUCCGG-GAC-CGGCa -3'
miRNA:   3'- -UGGACCU--------------GG---------CGGAGGUCgCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 53609 0.66 0.732076
Target:  5'- cACC-GGGCCGCCg-CAGCGucggacggacgaGgUCGGCc -3'
miRNA:   3'- -UGGaCCUGGCGGagGUCGC------------UgAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 53827 0.66 0.741345
Target:  5'- aGCCUcGGCgggaGCCUCgacgGGCGuCUCGGCg -3'
miRNA:   3'- -UGGAcCUGg---CGGAGg---UCGCuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 56320 0.72 0.432337
Target:  5'- -gCUGG-CgGCCguggCCGGCGACgCGGCg -3'
miRNA:   3'- ugGACCuGgCGGa---GGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 58015 0.71 0.455576
Target:  5'- cGCCgGGGCCGCCgCCGGCGaacccgccGCgccgcccguccccgUCGGCg -3'
miRNA:   3'- -UGGaCCUGGCGGaGGUCGC--------UG--------------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 58131 0.66 0.768604
Target:  5'- cCCUGGGCgGCCUggcCCGcCGcCUCGuGCa -3'
miRNA:   3'- uGGACCUGgCGGA---GGUcGCuGAGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 58361 0.69 0.578345
Target:  5'- gGCCUGGcGCCGCCcgacuUCCAGgaGGCgcgCGGg -3'
miRNA:   3'- -UGGACC-UGGCGG-----AGGUCg-CUGa--GCCg -5'
10818 5' -61.1 NC_002794.1 + 58625 0.73 0.360175
Target:  5'- gACCUGGugCGCCUgaucgCCAcGCaGCUgGGCg -3'
miRNA:   3'- -UGGACCugGCGGA-----GGU-CGcUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 58708 0.67 0.694303
Target:  5'- -gCUGGugCGCUUCCugcaccGCGuCUCGcGCc -3'
miRNA:   3'- ugGACCugGCGGAGGu-----CGCuGAGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.