miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 59895 0.68 0.636387
Target:  5'- cACCUGcGCCGCgUgCgCAGCGACaUgGGCg -3'
miRNA:   3'- -UGGACcUGGCGgA-G-GUCGCUG-AgCCG- -5'
10818 5' -61.1 NC_002794.1 + 61816 0.66 0.732076
Target:  5'- cAUCUccGGCgGCCgCCGGCGGC-CGGCg -3'
miRNA:   3'- -UGGAc-CUGgCGGaGGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 62114 0.7 0.530861
Target:  5'- gUCUGGugCGUgUCgAGCGACcgccaCGGCg -3'
miRNA:   3'- uGGACCugGCGgAGgUCGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 63918 0.66 0.732076
Target:  5'- cGCC-GcGACCGCCgcccggCCGGCGAguCUCGaGUc -3'
miRNA:   3'- -UGGaC-CUGGCGGa-----GGUCGCU--GAGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 64564 1.11 0.001034
Target:  5'- cACCUGGACCGCCUCCAGCGACUCGGCa -3'
miRNA:   3'- -UGGACCUGGCGGAGGUCGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 64980 0.66 0.768604
Target:  5'- cGCCU--ACCGCC-CCAGCuGCacuggCGGCa -3'
miRNA:   3'- -UGGAccUGGCGGaGGUCGcUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 65130 0.66 0.768604
Target:  5'- cGCCUGu-CCGagCUCCucGGCGACUgGGUc -3'
miRNA:   3'- -UGGACcuGGCg-GAGG--UCGCUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 65911 0.75 0.296197
Target:  5'- gACCUuGACCGUCgucgCCGGCGGCgguggcgUCGGCg -3'
miRNA:   3'- -UGGAcCUGGCGGa---GGUCGCUG-------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 66714 0.68 0.65578
Target:  5'- cGCCcGGcacgGCCGCCgccaccgCCGGCGGuggCGGCg -3'
miRNA:   3'- -UGGaCC----UGGCGGa------GGUCGCUga-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 68184 0.66 0.768604
Target:  5'- uCCUGaACCGCaagaUCCGGCcGCUCuacuGGCa -3'
miRNA:   3'- uGGACcUGGCGg---AGGUCGcUGAG----CCG- -5'
10818 5' -61.1 NC_002794.1 + 68761 0.67 0.675104
Target:  5'- aGCC-GGGCCGCCggggcgCCGGaCGcC-CGGCu -3'
miRNA:   3'- -UGGaCCUGGCGGa-----GGUC-GCuGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 69732 0.7 0.540257
Target:  5'- uGCCgccGGAgCGCCacggCCGGCGACgccgCGGg -3'
miRNA:   3'- -UGGa--CCUgGCGGa---GGUCGCUGa---GCCg -5'
10818 5' -61.1 NC_002794.1 + 70218 0.68 0.665454
Target:  5'- cGCCcGGACgGUCgggCgGGCGGC-CGGCc -3'
miRNA:   3'- -UGGaCCUGgCGGa--GgUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 70858 0.72 0.391195
Target:  5'- uGCC-GG-CCuCCUCCGGCGGCggcagCGGCg -3'
miRNA:   3'- -UGGaCCuGGcGGAGGUCGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 71382 0.73 0.367767
Target:  5'- cCCaGGACCuCCUCCAcggucuGCGGCUCGGg -3'
miRNA:   3'- uGGaCCUGGcGGAGGU------CGCUGAGCCg -5'
10818 5' -61.1 NC_002794.1 + 71567 0.76 0.236476
Target:  5'- cACCUGGGCgauccgguacacgCGCUUCCAcuGCGGCUgGGCg -3'
miRNA:   3'- -UGGACCUG-------------GCGGAGGU--CGCUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 75267 0.66 0.750527
Target:  5'- gACCcGGcuccACCGCCcacCCGGcCGGC-CGGCg -3'
miRNA:   3'- -UGGaCC----UGGCGGa--GGUC-GCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 75363 0.7 0.549709
Target:  5'- cGCCaccGAcCCGCCgcggCCGGCGGCggCGGCc -3'
miRNA:   3'- -UGGac-CU-GGCGGa---GGUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 76812 0.7 0.503051
Target:  5'- cACC-GGACCGgaCgucacgCCAGCGGC-CGGCg -3'
miRNA:   3'- -UGGaCCUGGCg-Ga-----GGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 78676 0.66 0.732076
Target:  5'- cACCUcGGCCGCCggCCGcauguGCGGCcgacaCGGCg -3'
miRNA:   3'- -UGGAcCUGGCGGa-GGU-----CGCUGa----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.