miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 79024 0.69 0.597618
Target:  5'- cCCUcGGCCGCCUUCuGCcGGCcCGGCc -3'
miRNA:   3'- uGGAcCUGGCGGAGGuCG-CUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 80424 0.8 0.133792
Target:  5'- cGCCgggcgGGGCCGCCgCCGGCGGCcgccggcccgUCGGCg -3'
miRNA:   3'- -UGGa----CCUGGCGGaGGUCGCUG----------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 82417 0.66 0.774831
Target:  5'- cGCCgc--CCGUCUUCGucuucccucagcucGCGGCUCGGCa -3'
miRNA:   3'- -UGGaccuGGCGGAGGU--------------CGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 82467 0.66 0.777483
Target:  5'- gACCUcGACgccgucgGCCUCC-GCGACgCGGCc -3'
miRNA:   3'- -UGGAcCUGg------CGGAGGuCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 83355 0.66 0.741345
Target:  5'- aACCUGG-CCaGCCUCCcGUGucuGCUCcagGGCc -3'
miRNA:   3'- -UGGACCuGG-CGGAGGuCGC---UGAG---CCG- -5'
10818 5' -61.1 NC_002794.1 + 83948 0.67 0.713314
Target:  5'- cGCCUGGACCGCC-UgGGCcGCcUGGa -3'
miRNA:   3'- -UGGACCUGGCGGaGgUCGcUGaGCCg -5'
10818 5' -61.1 NC_002794.1 + 83975 0.75 0.29685
Target:  5'- cGCCUGGACCGCCgcgaacaccgCCA-CGACg-GGCa -3'
miRNA:   3'- -UGGACCUGGCGGa---------GGUcGCUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 86898 0.74 0.316952
Target:  5'- cCCggcgGGGCCGCCgacCCGGUGACgcccgUGGCg -3'
miRNA:   3'- uGGa---CCUGGCGGa--GGUCGCUGa----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 87020 0.69 0.607292
Target:  5'- gGCgaGGGuCCGCaggaUCCGGgGAC-CGGCg -3'
miRNA:   3'- -UGgaCCU-GGCGg---AGGUCgCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 89450 0.68 0.65578
Target:  5'- cACCUaucGGAcgacCCGCggCUCCGGgGACUcCGGCc -3'
miRNA:   3'- -UGGA---CCU----GGCG--GAGGUCgCUGA-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 90470 0.69 0.559211
Target:  5'- gGCCgcgcgcggcgGGGCCGCCgUCCcGCGcgaUCGGCc -3'
miRNA:   3'- -UGGa---------CCUGGCGG-AGGuCGCug-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 91675 0.68 0.636387
Target:  5'- cACgUGGGCgCGCugguCUUCAGCGgcaACUCGGUg -3'
miRNA:   3'- -UGgACCUG-GCG----GAGGUCGC---UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 92312 0.67 0.703835
Target:  5'- -gCUGGGCgCGggcggcgggggcCCgggCgGGCGGCUCGGCg -3'
miRNA:   3'- ugGACCUG-GC------------GGa--GgUCGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 92759 0.69 0.568758
Target:  5'- cAUCUGcGgCGCCUucgCCAGCaACUCGGCg -3'
miRNA:   3'- -UGGACcUgGCGGA---GGUCGcUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 93998 0.66 0.768604
Target:  5'- ---cGGA-CGCCggcgCCGGCGGCgggcCGGCg -3'
miRNA:   3'- uggaCCUgGCGGa---GGUCGCUGa---GCCG- -5'
10818 5' -61.1 NC_002794.1 + 95867 0.67 0.713314
Target:  5'- ---cGGGCCGUUUCaguguGGCGACcCGGCg -3'
miRNA:   3'- uggaCCUGGCGGAGg----UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 99445 0.67 0.72273
Target:  5'- gACC-GGAuCCGCCgCCGGgGguaUCGGCg -3'
miRNA:   3'- -UGGaCCU-GGCGGaGGUCgCug-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 99750 0.67 0.693346
Target:  5'- gACCUGGucuggccgacguuGCCGCCgCCcGCGguGC-CGGCg -3'
miRNA:   3'- -UGGACC-------------UGGCGGaGGuCGC--UGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 100299 0.74 0.303439
Target:  5'- -gCUGGuGCCGCCUCCGccgcuggcacgcGCGGC-CGGCg -3'
miRNA:   3'- ugGACC-UGGCGGAGGU------------CGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 100787 0.66 0.747782
Target:  5'- cGCCUGcgguucgcGGCCGCUUCUgcgccuacgugccgGGCGGCgggggcCGGCa -3'
miRNA:   3'- -UGGAC--------CUGGCGGAGG--------------UCGCUGa-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.