miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 194462 0.67 0.713314
Target:  5'- aACCaguaGCCGCgCUCCAGCGGCUCc-- -3'
miRNA:   3'- -UGGacc-UGGCG-GAGGUCGCUGAGccg -5'
10818 5' -61.1 NC_002794.1 + 194011 0.67 0.694303
Target:  5'- cGCCUucGcGGCCGCCgccgCCGGCGcCUCGcccGCc -3'
miRNA:   3'- -UGGA--C-CUGGCGGa---GGUCGCuGAGC---CG- -5'
10818 5' -61.1 NC_002794.1 + 191907 0.68 0.665454
Target:  5'- cACCgGGACCGgCUgaaUCGGCGAagacgagaggaUCGGCg -3'
miRNA:   3'- -UGGaCCUGGCgGA---GGUCGCUg----------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 191729 0.66 0.777483
Target:  5'- gGCCcacGGACgCGaCCUCCgAG-GACUCGGa -3'
miRNA:   3'- -UGGa--CCUG-GC-GGAGG-UCgCUGAGCCg -5'
10818 5' -61.1 NC_002794.1 + 191660 0.72 0.391195
Target:  5'- cGCCgggGGACggCGCCggCAGCGGCggCGGCg -3'
miRNA:   3'- -UGGa--CCUG--GCGGagGUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 189024 0.69 0.607292
Target:  5'- gGCCaGGAgCCGCUcgaccgCCAGCGGCg-GGCu -3'
miRNA:   3'- -UGGaCCU-GGCGGa-----GGUCGCUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 187448 0.69 0.597618
Target:  5'- cGCCgucuGCCGCCgCuCGGCGucGCUCGGCg -3'
miRNA:   3'- -UGGacc-UGGCGGaG-GUCGC--UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 187208 0.73 0.360175
Target:  5'- cACCccGACCaUCUCCAGCGGCUcCGGCu -3'
miRNA:   3'- -UGGacCUGGcGGAGGUCGCUGA-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 186962 0.72 0.399218
Target:  5'- -gCUGGccGCCGCCUCCAGCaGCgCGcGCa -3'
miRNA:   3'- ugGACC--UGGCGGAGGUCGcUGaGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 186276 0.67 0.684723
Target:  5'- cGCCUGGcgcggcggcACCGCggCCAgGCGGC-CGGUc -3'
miRNA:   3'- -UGGACC---------UGGCGgaGGU-CGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 184601 0.69 0.607292
Target:  5'- gGCCgcgGGAUCGgCaacggCCAGCGGCagcguccacgaUCGGCg -3'
miRNA:   3'- -UGGa--CCUGGCgGa----GGUCGCUG-----------AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 184564 0.66 0.741345
Target:  5'- cGCCUcacGcGCCGCCg-CGGCGGCggCGGCc -3'
miRNA:   3'- -UGGA---CcUGGCGGagGUCGCUGa-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 181125 0.66 0.778364
Target:  5'- cACCUucaGGAgcaccagcgcuucuuCCGCCUCCAGCccguccgccgcgccGACggcgaaCGGCg -3'
miRNA:   3'- -UGGA---CCU---------------GGCGGAGGUCG--------------CUGa-----GCCG- -5'
10818 5' -61.1 NC_002794.1 + 180737 0.68 0.646088
Target:  5'- ---cGGACgaCGCCgUCCGGCucCUCGGCg -3'
miRNA:   3'- uggaCCUG--GCGG-AGGUCGcuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 180682 0.66 0.759616
Target:  5'- cGCC-GG-CCGCUcCCGGCGcC-CGGCg -3'
miRNA:   3'- -UGGaCCuGGCGGaGGUCGCuGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 172476 0.66 0.759616
Target:  5'- cACC-GuGACCGCUUCUAcuGUGACguguUCGGCu -3'
miRNA:   3'- -UGGaC-CUGGCGGAGGU--CGCUG----AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 156204 0.68 0.665454
Target:  5'- cGCCggucggaGGGCCGgCgacuccgCCGGCGGCUCcGCg -3'
miRNA:   3'- -UGGa------CCUGGCgGa------GGUCGCUGAGcCG- -5'
10818 5' -61.1 NC_002794.1 + 152423 0.68 0.65578
Target:  5'- uGCCccGGGCCGUCUgUCGGCaGCUgGGCu -3'
miRNA:   3'- -UGGa-CCUGGCGGA-GGUCGcUGAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 151635 0.74 0.338061
Target:  5'- cACUUGGcucGCCGCCggCCGGC-ACUUGGCu -3'
miRNA:   3'- -UGGACC---UGGCGGa-GGUCGcUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 151338 0.68 0.665454
Target:  5'- uCCUccGcGACCGCCUgCAacuCGGCUUGGCg -3'
miRNA:   3'- uGGA--C-CUGGCGGAgGUc--GCUGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.