miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 149695 0.7 0.530861
Target:  5'- gGCCgcggGGGCCGCCU--GGCGGgUgGGCc -3'
miRNA:   3'- -UGGa---CCUGGCGGAggUCGCUgAgCCG- -5'
10818 5' -61.1 NC_002794.1 + 148594 0.7 0.512254
Target:  5'- gGCC-GG-CCGCCgUCCAcgGACUCGGCc -3'
miRNA:   3'- -UGGaCCuGGCGG-AGGUcgCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 147735 0.67 0.710476
Target:  5'- aGCCUGucguugacguGGCCGCUggagaguuuucugaUCCugAGCGACgCGGCg -3'
miRNA:   3'- -UGGAC----------CUGGCGG--------------AGG--UCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 146968 0.69 0.568758
Target:  5'- --aUGGACCGCCUgUcGCGAggUCGGCg -3'
miRNA:   3'- uggACCUGGCGGAgGuCGCUg-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 142479 0.68 0.646088
Target:  5'- cACCgUGGACgcgugcggCGCCggCAGCGACgUGGCg -3'
miRNA:   3'- -UGG-ACCUG--------GCGGagGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 142090 0.72 0.431489
Target:  5'- gGCC-GGaauuuccgaacaaGCCGCCUCCuucucuGCGACcCGGCg -3'
miRNA:   3'- -UGGaCC-------------UGGCGGAGGu-----CGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 141649 0.66 0.732076
Target:  5'- gGCgUGGccGCgGCCgCCGGCGGgUCGaGCg -3'
miRNA:   3'- -UGgACC--UGgCGGaGGUCGCUgAGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 141441 0.68 0.646088
Target:  5'- cGCCgGGGgCGCCgggAGCGGCgCGGCg -3'
miRNA:   3'- -UGGaCCUgGCGGaggUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 140292 0.66 0.768604
Target:  5'- uUUUGGGCCucucggccaagGCCUgCCGGCGGCUggagaaguccuUGGCg -3'
miRNA:   3'- uGGACCUGG-----------CGGA-GGUCGCUGA-----------GCCG- -5'
10818 5' -61.1 NC_002794.1 + 138937 0.68 0.616982
Target:  5'- uGCC-GGugCGCCcCCAccguggcgugcuGCGACgCGGCg -3'
miRNA:   3'- -UGGaCCugGCGGaGGU------------CGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 138459 0.67 0.703835
Target:  5'- gGCCUGcgacguggacguGACCGUCUCguCGGCGGuCcCGGCg -3'
miRNA:   3'- -UGGAC------------CUGGCGGAG--GUCGCU-GaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 137642 0.68 0.65578
Target:  5'- uCCUGGcgggcGCCggGCCUCCGGCGccGCUgGuGCg -3'
miRNA:   3'- uGGACC-----UGG--CGGAGGUCGC--UGAgC-CG- -5'
10818 5' -61.1 NC_002794.1 + 137586 0.7 0.549709
Target:  5'- gGCCggagugcggGGAgCCGCCgCCGGCGGucgCGGCg -3'
miRNA:   3'- -UGGa--------CCU-GGCGGaGGUCGCUga-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 137422 0.71 0.475894
Target:  5'- cGCCgcgGaGACCGCg-CCGGCGcucuggaacgACUCGGCg -3'
miRNA:   3'- -UGGa--C-CUGGCGgaGGUCGC----------UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 134689 0.7 0.540257
Target:  5'- cGCUUGGcucgACCGCCUCUGGgGGC-CGGa -3'
miRNA:   3'- -UGGACC----UGGCGGAGGUCgCUGaGCCg -5'
10818 5' -61.1 NC_002794.1 + 134103 0.66 0.759616
Target:  5'- uGCCggacgacGGACCcCCUCCGucCGACggcgCGGCg -3'
miRNA:   3'- -UGGa------CCUGGcGGAGGUc-GCUGa---GCCG- -5'
10818 5' -61.1 NC_002794.1 + 131665 0.71 0.493921
Target:  5'- uGCCUGuGACCGCCgacUCAGCGg--CGGUc -3'
miRNA:   3'- -UGGAC-CUGGCGGa--GGUCGCugaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 126591 0.66 0.759616
Target:  5'- uACCgGGACugagCGCCgaggCCGGCGccgACgucgCGGCg -3'
miRNA:   3'- -UGGaCCUG----GCGGa---GGUCGC---UGa---GCCG- -5'
10818 5' -61.1 NC_002794.1 + 126076 0.75 0.290373
Target:  5'- gGCCUGGACCgGCCUgCGGCcGACcgacUGGCu -3'
miRNA:   3'- -UGGACCUGG-CGGAgGUCG-CUGa---GCCG- -5'
10818 5' -61.1 NC_002794.1 + 125748 0.71 0.4582
Target:  5'- gGCCgcgGGACgGCggCCGGCGGCUCGcCa -3'
miRNA:   3'- -UGGa--CCUGgCGgaGGUCGCUGAGCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.