miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10818 5' -61.1 NC_002794.1 + 124905 0.67 0.72273
Target:  5'- -gCUGGuCCGCgagaCCGGCGAgucCUCGGUg -3'
miRNA:   3'- ugGACCuGGCGga--GGUCGCU---GAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 123215 0.68 0.665454
Target:  5'- gACCUGuacAUCGUCUCgAGCGGCcUGGCc -3'
miRNA:   3'- -UGGACc--UGGCGGAGgUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 122430 0.66 0.759616
Target:  5'- uACCUGGA-CGaCCUguaCAGCGAg-CGGCu -3'
miRNA:   3'- -UGGACCUgGC-GGAg--GUCGCUgaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 121959 0.8 0.140506
Target:  5'- cGCCUGGAgCG-CUCCGuGCGGCUCGGUc -3'
miRNA:   3'- -UGGACCUgGCgGAGGU-CGCUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 121389 0.68 0.616982
Target:  5'- cGCCgGGACCGCggCCGGCG-C-CGGg -3'
miRNA:   3'- -UGGaCCUGGCGgaGGUCGCuGaGCCg -5'
10818 5' -61.1 NC_002794.1 + 121248 0.68 0.616982
Target:  5'- uGCCgccGCCGCCgCC-GCGGCcUCGGCa -3'
miRNA:   3'- -UGGaccUGGCGGaGGuCGCUG-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 120850 0.78 0.196722
Target:  5'- cCCUGcgcGGCCGUCgUCCAGCGcCUCGGCu -3'
miRNA:   3'- uGGAC---CUGGCGG-AGGUCGCuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 119764 0.7 0.540257
Target:  5'- gACCaGGucgcgGCCgGCCUCCAgGCGGCUcCGGUc -3'
miRNA:   3'- -UGGaCC-----UGG-CGGAGGU-CGCUGA-GCCG- -5'
10818 5' -61.1 NC_002794.1 + 119701 0.7 0.521525
Target:  5'- -gCUGGGCCGgCggccacaaCGGCGGCuUCGGCa -3'
miRNA:   3'- ugGACCUGGCgGag------GUCGCUG-AGCCG- -5'
10818 5' -61.1 NC_002794.1 + 118676 0.66 0.750527
Target:  5'- cGCCcGcGGCCGCCgCCGGCGGCa--GCg -3'
miRNA:   3'- -UGGaC-CUGGCGGaGGUCGCUGagcCG- -5'
10818 5' -61.1 NC_002794.1 + 117598 0.68 0.646088
Target:  5'- gGCCUGG-CaCGCgUCCaggaacucgccgAGCGACagGGCg -3'
miRNA:   3'- -UGGACCuG-GCGgAGG------------UCGCUGagCCG- -5'
10818 5' -61.1 NC_002794.1 + 116893 0.76 0.242517
Target:  5'- cGCC-GGcGCCGUCUCCGGCGGC-CGGUc -3'
miRNA:   3'- -UGGaCC-UGGCGGAGGUCGCUGaGCCG- -5'
10818 5' -61.1 NC_002794.1 + 116702 0.67 0.694303
Target:  5'- gGCCUccaGcACCGCgUCgAGCGuCUCGGUg -3'
miRNA:   3'- -UGGA---CcUGGCGgAGgUCGCuGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 116646 0.66 0.732076
Target:  5'- gGCCcGGccguCCGgCUCUugaGGCGcuGCUCGGCg -3'
miRNA:   3'- -UGGaCCu---GGCgGAGG---UCGC--UGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 116156 0.66 0.759616
Target:  5'- gGCCUGcACCGCCUCCGugGGCagGGg -3'
miRNA:   3'- -UGGACcUGGCGGAGGUcgCUGagCCg -5'
10818 5' -61.1 NC_002794.1 + 115826 0.74 0.330913
Target:  5'- cGCCUGGAUCGgCggggcCCGGCGgGCUCGGg -3'
miRNA:   3'- -UGGACCUGGCgGa----GGUCGC-UGAGCCg -5'
10818 5' -61.1 NC_002794.1 + 114962 0.74 0.323876
Target:  5'- ---gGGACCGCCg-CAGCaGCUCGGCg -3'
miRNA:   3'- uggaCCUGGCGGagGUCGcUGAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 114846 0.68 0.645118
Target:  5'- gGCUcGGAggaccucCCGCCgcUCCAGCGcCUCGaGCa -3'
miRNA:   3'- -UGGaCCU-------GGCGG--AGGUCGCuGAGC-CG- -5'
10818 5' -61.1 NC_002794.1 + 114747 0.72 0.423907
Target:  5'- aGCC-GGcGCCGCCcgCCGGCGccggucCUCGGCg -3'
miRNA:   3'- -UGGaCC-UGGCGGa-GGUCGCu-----GAGCCG- -5'
10818 5' -61.1 NC_002794.1 + 114694 0.66 0.732076
Target:  5'- gGCCcGGACCuCCUgcgagacggaCGGCGGCggCGGCg -3'
miRNA:   3'- -UGGaCCUGGcGGAg---------GUCGCUGa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.