miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10819 3' -56.5 NC_002794.1 + 187584 0.66 0.931278
Target:  5'- gUCGGCGCgGccGCCGucGCGAcGCCcGGCGu -3'
miRNA:   3'- -AGUCGCGgU--UGGU--CGUUaUGGcCCGC- -5'
10819 3' -56.5 NC_002794.1 + 184814 0.66 0.931278
Target:  5'- gCAGCGUCAcggGgCAcGCGu--CCGGGCGc -3'
miRNA:   3'- aGUCGCGGU---UgGU-CGUuauGGCCCGC- -5'
10819 3' -56.5 NC_002794.1 + 142493 0.66 0.931278
Target:  5'- gCGGCGCCGG-CAGCGA---CGuGGCGg -3'
miRNA:   3'- aGUCGCGGUUgGUCGUUaugGC-CCGC- -5'
10819 3' -56.5 NC_002794.1 + 50370 0.66 0.931278
Target:  5'- gCGGaGCCGGCCGGCAggACCGaGUc -3'
miRNA:   3'- aGUCgCGGUUGGUCGUuaUGGCcCGc -5'
10819 3' -56.5 NC_002794.1 + 12038 0.66 0.931278
Target:  5'- gUCcGCGCCuuccccuGCCGGUAucuCUGGGCc -3'
miRNA:   3'- -AGuCGCGGu------UGGUCGUuauGGCCCGc -5'
10819 3' -56.5 NC_002794.1 + 86358 0.66 0.931278
Target:  5'- --cGCGcCCGACCGGaugccCCGGGCc -3'
miRNA:   3'- aguCGC-GGUUGGUCguuauGGCCCGc -5'
10819 3' -56.5 NC_002794.1 + 86526 0.66 0.931278
Target:  5'- --cGCGcCCGACCGGaugccCCGGGCc -3'
miRNA:   3'- aguCGC-GGUUGGUCguuauGGCCCGc -5'
10819 3' -56.5 NC_002794.1 + 147705 0.66 0.931278
Target:  5'- gCGGCGCaCGugCGcCAGUACCGcGGUc -3'
miRNA:   3'- aGUCGCG-GUugGUcGUUAUGGC-CCGc -5'
10819 3' -56.5 NC_002794.1 + 110408 0.66 0.931278
Target:  5'- cUCGGauCCGGCgAGaGAaGCCGGGCGg -3'
miRNA:   3'- -AGUCgcGGUUGgUCgUUaUGGCCCGC- -5'
10819 3' -56.5 NC_002794.1 + 109297 0.66 0.930772
Target:  5'- --cGCGCUGGCCAacccgacggucucGaCGAUgGCCGGGCGc -3'
miRNA:   3'- aguCGCGGUUGGU-------------C-GUUA-UGGCCCGC- -5'
10819 3' -56.5 NC_002794.1 + 184952 0.66 0.930772
Target:  5'- gCuGCGCCGGCCcGCGcaGCCgcucgucGGGCa -3'
miRNA:   3'- aGuCGCGGUUGGuCGUuaUGG-------CCCGc -5'
10819 3' -56.5 NC_002794.1 + 139084 0.66 0.92821
Target:  5'- aCGGgGUUAGCCaaacaguggagauugGGCAcgACgCGGGCGa -3'
miRNA:   3'- aGUCgCGGUUGG---------------UCGUuaUG-GCCCGC- -5'
10819 3' -56.5 NC_002794.1 + 137490 0.66 0.926644
Target:  5'- gCAGCGCCAcggucgguuccuccGCCGGCGuuucgacguggAUGaccgagacggagucuUCGGGCGc -3'
miRNA:   3'- aGUCGCGGU--------------UGGUCGU-----------UAU---------------GGCCCGC- -5'
10819 3' -56.5 NC_002794.1 + 124263 0.66 0.926118
Target:  5'- gUAGuCGCCGGCCAGCc--GCCGcGCc -3'
miRNA:   3'- aGUC-GCGGUUGGUCGuuaUGGCcCGc -5'
10819 3' -56.5 NC_002794.1 + 68490 0.66 0.926118
Target:  5'- -aGGCgGCCgAGCCGGCcGUGC-GGGUGa -3'
miRNA:   3'- agUCG-CGG-UUGGUCGuUAUGgCCCGC- -5'
10819 3' -56.5 NC_002794.1 + 113154 0.66 0.926118
Target:  5'- --cGCGUCAGCguGUAGcgcGCgCGGGCGg -3'
miRNA:   3'- aguCGCGGUUGguCGUUa--UG-GCCCGC- -5'
10819 3' -56.5 NC_002794.1 + 145742 0.66 0.926118
Target:  5'- gCGGCGCCGGCaucgaCGGCGAccCCGaGCGa -3'
miRNA:   3'- aGUCGCGGUUG-----GUCGUUauGGCcCGC- -5'
10819 3' -56.5 NC_002794.1 + 138910 0.66 0.926118
Target:  5'- aUCAgGUGCUGACCgcGGCGGauggucUGCCGGuGCGc -3'
miRNA:   3'- -AGU-CGCGGUUGG--UCGUU------AUGGCC-CGC- -5'
10819 3' -56.5 NC_002794.1 + 195194 0.66 0.926118
Target:  5'- aCAGCGCCGucagguCCAGCcccgccaGCUGcGGCa -3'
miRNA:   3'- aGUCGCGGUu-----GGUCGuua----UGGC-CCGc -5'
10819 3' -56.5 NC_002794.1 + 54262 0.66 0.926118
Target:  5'- aCGGCGCCGcgucgggccaaACCGuGCAGacGCagcaGGGCGg -3'
miRNA:   3'- aGUCGCGGU-----------UGGU-CGUUa-UGg---CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.