miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10819 5' -57.8 NC_002794.1 + 122139 0.66 0.925153
Target:  5'- aCCGACCGuuUCaCGCCGGCcgUGucCGa -3'
miRNA:   3'- gGGCUGGCu-GGaGCGGCCGa-ACuuGC- -5'
10819 5' -57.8 NC_002794.1 + 131540 0.66 0.925153
Target:  5'- gCCCGucaucaCGGCCUCGCCcguGGUcgGcGCGg -3'
miRNA:   3'- -GGGCug----GCUGGAGCGG---CCGaaCuUGC- -5'
10819 5' -57.8 NC_002794.1 + 32810 0.66 0.925153
Target:  5'- gCCgCGACCGucgucuucgucgGCCUCgcgGCCGGCUcaucgGuAGCGg -3'
miRNA:   3'- -GG-GCUGGC------------UGGAG---CGGCCGAa----C-UUGC- -5'
10819 5' -57.8 NC_002794.1 + 80626 0.66 0.925153
Target:  5'- gCCGGCCGAgcaCCUCGCgacCGGCgacccgcaGACGc -3'
miRNA:   3'- gGGCUGGCU---GGAGCG---GCCGaac-----UUGC- -5'
10819 5' -57.8 NC_002794.1 + 121380 0.66 0.925153
Target:  5'- gCCGGCCgccgccggGACCgcgGCCGGCgccgGGACc -3'
miRNA:   3'- gGGCUGG--------CUGGag-CGGCCGaa--CUUGc -5'
10819 5' -57.8 NC_002794.1 + 58054 0.66 0.919898
Target:  5'- cCCCGucGgCGGCCcCGgCGGCggcgGGACGg -3'
miRNA:   3'- -GGGC--UgGCUGGaGCgGCCGaa--CUUGC- -5'
10819 5' -57.8 NC_002794.1 + 139452 0.66 0.919898
Target:  5'- gCCGAUCGGCaggUCGUCGuGCgccaGGACGg -3'
miRNA:   3'- gGGCUGGCUGg--AGCGGC-CGaa--CUUGC- -5'
10819 5' -57.8 NC_002794.1 + 69744 0.66 0.919898
Target:  5'- gCCaCGGCCGGCgaCGCC-GCggGGAUGg -3'
miRNA:   3'- -GG-GCUGGCUGgaGCGGcCGaaCUUGC- -5'
10819 5' -57.8 NC_002794.1 + 95025 0.66 0.919898
Target:  5'- gCUGugCGGCauCUCGCCGGU---GGCGg -3'
miRNA:   3'- gGGCugGCUG--GAGCGGCCGaacUUGC- -5'
10819 5' -57.8 NC_002794.1 + 62306 0.66 0.918279
Target:  5'- gCCCGcgcgcagacggaaaACCGccCCUCGCUGGCg-GAGCc -3'
miRNA:   3'- -GGGC--------------UGGCu-GGAGCGGCCGaaCUUGc -5'
10819 5' -57.8 NC_002794.1 + 119525 0.66 0.915538
Target:  5'- gCCGGCCgcgGACCccucguccgcggccgUCGCCGGCcacgugucccgGAGCGc -3'
miRNA:   3'- gGGCUGG---CUGG---------------AGCGGCCGaa---------CUUGC- -5'
10819 5' -57.8 NC_002794.1 + 101580 0.66 0.914426
Target:  5'- gCCGGCCG-CCgcgGCCGGgg-GGGCGg -3'
miRNA:   3'- gGGCUGGCuGGag-CGGCCgaaCUUGC- -5'
10819 5' -57.8 NC_002794.1 + 138985 0.66 0.914426
Target:  5'- gCCUGGCgGGCCUgCGCgaaGGCUUu-GCGg -3'
miRNA:   3'- -GGGCUGgCUGGA-GCGg--CCGAAcuUGC- -5'
10819 5' -57.8 NC_002794.1 + 44204 0.66 0.914426
Target:  5'- gCCgGGCCGACgU--CCGGCUcGGGCGc -3'
miRNA:   3'- -GGgCUGGCUGgAgcGGCCGAaCUUGC- -5'
10819 5' -57.8 NC_002794.1 + 19534 0.66 0.914426
Target:  5'- gCgCGGCgCGGCC-CGCCGGUgucGGACc -3'
miRNA:   3'- -GgGCUG-GCUGGaGCGGCCGaa-CUUGc -5'
10819 5' -57.8 NC_002794.1 + 81998 0.66 0.914426
Target:  5'- gCCCG-UCGACgaCGCCGGCcgcuGACGc -3'
miRNA:   3'- -GGGCuGGCUGgaGCGGCCGaac-UUGC- -5'
10819 5' -57.8 NC_002794.1 + 44288 0.66 0.908738
Target:  5'- gUCCGcGCCcGCCggGCCGGCgaggcgggGAGCGa -3'
miRNA:   3'- -GGGC-UGGcUGGagCGGCCGaa------CUUGC- -5'
10819 5' -57.8 NC_002794.1 + 109 0.66 0.908738
Target:  5'- gCCGGCCGACCgcacgaaaCGCCGaCcgGAGCc -3'
miRNA:   3'- gGGCUGGCUGGa-------GCGGCcGaaCUUGc -5'
10819 5' -57.8 NC_002794.1 + 62060 0.66 0.908738
Target:  5'- gCCGACgccggCGGCgaCGCCGGCggcGACGa -3'
miRNA:   3'- gGGCUG-----GCUGgaGCGGCCGaacUUGC- -5'
10819 5' -57.8 NC_002794.1 + 2333 0.66 0.908738
Target:  5'- aUCUGGCCGGCC-CaCCGGUccGGACa -3'
miRNA:   3'- -GGGCUGGCUGGaGcGGCCGaaCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.