Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1082 | 5' | -49.8 | NC_000929.1 | + | 6238 | 0.66 | 0.874742 |
Target: 5'- cGCAGGCGUUGCCG--GAAuuacaguuaaauCAGGCAu- -3' miRNA: 3'- -CGUCUGUAGUGGCuaCUU------------GUCCGUug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 7200 | 0.68 | 0.788734 |
Target: 5'- cGCGGAUAccugcUCAUCucaggGAGCAGGCAAg -3' miRNA: 3'- -CGUCUGU-----AGUGGcua--CUUGUCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 10349 | 0.7 | 0.674677 |
Target: 5'- gGCGGGCAauaaucugguagaUCugCGGcugGGACAGGCggUa -3' miRNA: 3'- -CGUCUGU-------------AGugGCUa--CUUGUCCGuuG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 11381 | 0.68 | 0.756211 |
Target: 5'- gGCAGGauCAcCACCGAUGGcACGGGUg-- -3' miRNA: 3'- -CGUCU--GUaGUGGCUACU-UGUCCGuug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 11646 | 0.67 | 0.809495 |
Target: 5'- gGCGGGuCAUaCGCCGccGGGCGGGgAAUa -3' miRNA: 3'- -CGUCU-GUA-GUGGCuaCUUGUCCgUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 11810 | 0.74 | 0.446541 |
Target: 5'- cCAGACGgcccCACCGGccacAACAGGCAACa -3' miRNA: 3'- cGUCUGUa---GUGGCUac--UUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 12815 | 0.68 | 0.799216 |
Target: 5'- gGCAGgaugGCAUCAgCGAaGAGCuGGaGCAGCg -3' miRNA: 3'- -CGUC----UGUAGUgGCUaCUUG-UC-CGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 14592 | 0.77 | 0.297668 |
Target: 5'- uGCAGAgCcgCAgCGAUGAGCuGGCAAUg -3' miRNA: 3'- -CGUCU-GuaGUgGCUACUUGuCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 15866 | 0.68 | 0.756211 |
Target: 5'- -uGGGCGucUCACCGGaaGACuGGCAGCg -3' miRNA: 3'- cgUCUGU--AGUGGCUacUUGuCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 16487 | 0.66 | 0.882976 |
Target: 5'- gGCAGuACGUUGCCGuuAUGGAU-GGCAGa -3' miRNA: 3'- -CGUC-UGUAGUGGC--UACUUGuCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 17515 | 0.67 | 0.819558 |
Target: 5'- cGCAGcCAUCACuCGggGAAUGGcGCGGu -3' miRNA: 3'- -CGUCuGUAGUG-GCuaCUUGUC-CGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 18628 | 1.13 | 0.001038 |
Target: 5'- uGCAGACAUCACCGAUGAACAGGCAACa -3' miRNA: 3'- -CGUCUGUAGUGGCUACUUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 19029 | 0.82 | 0.150509 |
Target: 5'- gGCGGuGCuGUCuGCUGAUGAACAGGCAGCa -3' miRNA: 3'- -CGUC-UG-UAG-UGGCUACUUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 20227 | 0.71 | 0.593092 |
Target: 5'- cGUGGAaGUCACCGAaGAACAacuGGCGAUc -3' miRNA: 3'- -CGUCUgUAGUGGCUaCUUGU---CCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 20586 | 0.69 | 0.699261 |
Target: 5'- aGCGGACGggcaGCCgGAUGAugccguggcagaACAGGCAcugGCa -3' miRNA: 3'- -CGUCUGUag--UGG-CUACU------------UGUCCGU---UG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 21226 | 0.66 | 0.874742 |
Target: 5'- uCAGACGUuuggcccgacCACCGG-GAugAGGCuGACg -3' miRNA: 3'- cGUCUGUA----------GUGGCUaCUugUCCG-UUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 21574 | 0.66 | 0.866218 |
Target: 5'- uCAGACGccaguaauuUCAUCG-UGAGCGGGUcACg -3' miRNA: 3'- cGUCUGU---------AGUGGCuACUUGUCCGuUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 21632 | 0.66 | 0.874742 |
Target: 5'- ---cACAUCACCGGcu-GCAaGGCGACg -3' miRNA: 3'- cgucUGUAGUGGCUacuUGU-CCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 23440 | 0.66 | 0.890912 |
Target: 5'- gGCAGGCGgaugaACCGAaaAACGacGGCGGCg -3' miRNA: 3'- -CGUCUGUag---UGGCUacUUGU--CCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 23684 | 0.74 | 0.446541 |
Target: 5'- cGCAGGCGauaUgAUUGAUGcACAGGCGGCu -3' miRNA: 3'- -CGUCUGU---AgUGGCUACuUGUCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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