Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1082 | 5' | -49.8 | NC_000929.1 | + | 16487 | 0.66 | 0.882976 |
Target: 5'- gGCAGuACGUUGCCGuuAUGGAU-GGCAGa -3' miRNA: 3'- -CGUC-UGUAGUGGC--UACUUGuCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 7200 | 0.68 | 0.788734 |
Target: 5'- cGCGGAUAccugcUCAUCucaggGAGCAGGCAAg -3' miRNA: 3'- -CGUCUGU-----AGUGGcua--CUUGUCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 12815 | 0.68 | 0.799216 |
Target: 5'- gGCAGgaugGCAUCAgCGAaGAGCuGGaGCAGCg -3' miRNA: 3'- -CGUC----UGUAGUgGCUaCUUG-UC-CGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 28493 | 0.67 | 0.829393 |
Target: 5'- gGCAGAaauUgACgGAUGGacucgcaaggACGGGCAACu -3' miRNA: 3'- -CGUCUgu-AgUGgCUACU----------UGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 32079 | 0.67 | 0.842756 |
Target: 5'- uGCcGACAgcgaCACUGAuucauacaugugguuUGaAACAGGCGACa -3' miRNA: 3'- -CGuCUGUa---GUGGCU---------------AC-UUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 23912 | 0.66 | 0.866218 |
Target: 5'- gGCGG-CAUCGCUGAcacaaGAACggGGGCGAg -3' miRNA: 3'- -CGUCuGUAGUGGCUa----CUUG--UCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 6238 | 0.66 | 0.874742 |
Target: 5'- cGCAGGCGUUGCCG--GAAuuacaguuaaauCAGGCAu- -3' miRNA: 3'- -CGUCUGUAGUGGCuaCUU------------GUCCGUug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 21226 | 0.66 | 0.874742 |
Target: 5'- uCAGACGUuuggcccgacCACCGG-GAugAGGCuGACg -3' miRNA: 3'- cGUCUGUA----------GUGGCUaCUugUCCG-UUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 26104 | 0.66 | 0.880537 |
Target: 5'- cCAGuucccGCGUCACCGAggaugguauggggcUGAauauuuacGCGGGCGAUa -3' miRNA: 3'- cGUC-----UGUAGUGGCU--------------ACU--------UGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 15866 | 0.68 | 0.756211 |
Target: 5'- -uGGGCGucUCACCGGaaGACuGGCAGCg -3' miRNA: 3'- cgUCUGU--AGUGGCUacUUGuCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 20586 | 0.69 | 0.699261 |
Target: 5'- aGCGGACGggcaGCCgGAUGAugccguggcagaACAGGCAcugGCa -3' miRNA: 3'- -CGUCUGUag--UGG-CUACU------------UGUCCGU---UG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 24390 | 0.69 | 0.696933 |
Target: 5'- aGCAGAuCAUCGCC-AUGAACucgcuguaucacGGCGAUa -3' miRNA: 3'- -CGUCU-GUAGUGGcUACUUGu-----------CCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 19029 | 0.82 | 0.150509 |
Target: 5'- gGCGGuGCuGUCuGCUGAUGAACAGGCAGCa -3' miRNA: 3'- -CGUC-UG-UAG-UGGCUACUUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 14592 | 0.77 | 0.297668 |
Target: 5'- uGCAGAgCcgCAgCGAUGAGCuGGCAAUg -3' miRNA: 3'- -CGUCU-GuaGUgGCUACUUGuCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 25847 | 0.74 | 0.425734 |
Target: 5'- aGCAGGCGUCaACCcAUGAaaaaGCAGGCGc- -3' miRNA: 3'- -CGUCUGUAG-UGGcUACU----UGUCCGUug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 23684 | 0.74 | 0.446541 |
Target: 5'- cGCAGGCGauaUgAUUGAUGcACAGGCGGCu -3' miRNA: 3'- -CGUCUGU---AgUGGCUACuUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 32638 | 0.73 | 0.500891 |
Target: 5'- -aGGACAgccaauggCACCGAUGGuCAGGCGuACa -3' miRNA: 3'- cgUCUGUa-------GUGGCUACUuGUCCGU-UG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 30042 | 0.72 | 0.55796 |
Target: 5'- -gGGGCGUgCGCCGca-AACAGGCGACa -3' miRNA: 3'- cgUCUGUA-GUGGCuacUUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 20227 | 0.71 | 0.593092 |
Target: 5'- cGUGGAaGUCACCGAaGAACAacuGGCGAUc -3' miRNA: 3'- -CGUCUgUAGUGGCUaCUUGU---CCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 29529 | 0.7 | 0.652253 |
Target: 5'- uCAGAUgAUCGCCgugGAUGGugGGGUGACa -3' miRNA: 3'- cGUCUG-UAGUGG---CUACUugUCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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