miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 3' -56.9 NC_002794.1 + 91613 0.66 0.926089
Target:  5'- cGGCCgagggCCACgCCGACcuCCUGCGCcGCc -3'
miRNA:   3'- cUUGGa----GGUG-GGCUG--GGACGUGaUGc -5'
10820 3' -56.9 NC_002794.1 + 72710 0.66 0.926089
Target:  5'- cGGGCCgaCCACCgugcccaugaCGGCCCcGCGCUcccGCGg -3'
miRNA:   3'- -CUUGGa-GGUGG----------GCUGGGaCGUGA---UGC- -5'
10820 3' -56.9 NC_002794.1 + 138557 0.66 0.926089
Target:  5'- -cGCCUCCGCCCGcuccgucgucGCUCgaucgagGCGCgucgGCGc -3'
miRNA:   3'- cuUGGAGGUGGGC----------UGGGa------CGUGa---UGC- -5'
10820 3' -56.9 NC_002794.1 + 176185 0.66 0.920742
Target:  5'- uGGACC-CCA-CCGACgCUGUACgggugGCGg -3'
miRNA:   3'- -CUUGGaGGUgGGCUGgGACGUGa----UGC- -5'
10820 3' -56.9 NC_002794.1 + 51455 0.66 0.920742
Target:  5'- aGAAUUUCCACCUGcUCCUGguCgACGa -3'
miRNA:   3'- -CUUGGAGGUGGGCuGGGACguGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 80769 0.66 0.920742
Target:  5'- cGGACCUCUucgACCUGugucgccaCCUGCGCcGCGu -3'
miRNA:   3'- -CUUGGAGG---UGGGCug------GGACGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 116644 0.66 0.920742
Target:  5'- gGGGCCcggCCGUCCGGCUCUugagGCGCUGCu -3'
miRNA:   3'- -CUUGGa--GGUGGGCUGGGA----CGUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 117272 0.66 0.920195
Target:  5'- aGACaCUCCGCgaCG-CCCUGCgcggacaGCUGCGg -3'
miRNA:   3'- cUUG-GAGGUGg-GCuGGGACG-------UGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 38255 0.66 0.915168
Target:  5'- gGGGCCUCCugCgugaggcgCGGCCCccGCGCgACGu -3'
miRNA:   3'- -CUUGGAGGugG--------GCUGGGa-CGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 121799 0.66 0.915168
Target:  5'- -cACCgcgaCCGgCCGGCgCCUGcCGCUGCa -3'
miRNA:   3'- cuUGGa---GGUgGGCUG-GGAC-GUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 37176 0.66 0.911131
Target:  5'- gGGACCUCCaguuucccgcacgcGCCCacgacgucgggcaGCCC-GCACUGCGa -3'
miRNA:   3'- -CUUGGAGG--------------UGGGc------------UGGGaCGUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 39687 0.66 0.909366
Target:  5'- -cGCUUCUucgucGCCCGGCaCCgccgGCGCUACc -3'
miRNA:   3'- cuUGGAGG-----UGGGCUG-GGa---CGUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 100895 0.66 0.90334
Target:  5'- uGGACCUCUACCCGgu-CUGCAUgGCc -3'
miRNA:   3'- -CUUGGAGGUGGGCuggGACGUGaUGc -5'
10820 3' -56.9 NC_002794.1 + 24178 0.66 0.90334
Target:  5'- cGGCCUCgACCCcgcggcaccgaGACCgaGCGCgGCGg -3'
miRNA:   3'- cUUGGAGgUGGG-----------CUGGgaCGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 183364 0.66 0.902725
Target:  5'- cGGACC-CCAgguCCCGGCCgUGCcccgucccgccgaGCUGCa -3'
miRNA:   3'- -CUUGGaGGU---GGGCUGGgACG-------------UGAUGc -5'
10820 3' -56.9 NC_002794.1 + 80559 0.66 0.897091
Target:  5'- cGGACCcguUCCGCgCCGugCCgacGCACgggcugACGg -3'
miRNA:   3'- -CUUGG---AGGUG-GGCugGGa--CGUGa-----UGC- -5'
10820 3' -56.9 NC_002794.1 + 58808 0.66 0.897091
Target:  5'- -cGCCUCUACCCG-CCCUuccucaaccGC-CUGCc -3'
miRNA:   3'- cuUGGAGGUGGGCuGGGA---------CGuGAUGc -5'
10820 3' -56.9 NC_002794.1 + 63213 0.66 0.897091
Target:  5'- cGACCUgcgcgaCCugCCGcCCCUGCGCcuccGCGc -3'
miRNA:   3'- cUUGGA------GGugGGCuGGGACGUGa---UGC- -5'
10820 3' -56.9 NC_002794.1 + 181152 0.66 0.897091
Target:  5'- -cGCCUCCAgCCCGuCCgCcGCGCcgACGg -3'
miRNA:   3'- cuUGGAGGU-GGGCuGG-GaCGUGa-UGC- -5'
10820 3' -56.9 NC_002794.1 + 50797 0.66 0.897091
Target:  5'- -cGCCUCCucGCCCGGCgUCggGCGCUcCGg -3'
miRNA:   3'- cuUGGAGG--UGGGCUG-GGa-CGUGAuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.