miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 3' -56.9 NC_002794.1 + 64061 1.08 0.003522
Target:  5'- cGAACCUCCACCCGACCCUGCACUACGu -3'
miRNA:   3'- -CUUGGAGGUGGGCUGGGACGUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 125174 0.86 0.100063
Target:  5'- aGAACUUCCACCUGGCCCUGacgaACUGCGc -3'
miRNA:   3'- -CUUGGAGGUGGGCUGGGACg---UGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 20841 0.76 0.407887
Target:  5'- -cACCcgCCACCUGAUCCUGCGCU-CGu -3'
miRNA:   3'- cuUGGa-GGUGGGCUGGGACGUGAuGC- -5'
10820 3' -56.9 NC_002794.1 + 184172 0.73 0.535459
Target:  5'- --gUCUCCACCCGACaCCgcgGCGCccgGCGa -3'
miRNA:   3'- cuuGGAGGUGGGCUG-GGa--CGUGa--UGC- -5'
10820 3' -56.9 NC_002794.1 + 117401 0.73 0.564752
Target:  5'- cGGGCCUCCACCgucgCGACCCgcUGCaggaGCUGCc -3'
miRNA:   3'- -CUUGGAGGUGG----GCUGGG--ACG----UGAUGc -5'
10820 3' -56.9 NC_002794.1 + 84162 0.72 0.594448
Target:  5'- -cGCCUCCuCUCGGCCCaGCGCU-CGg -3'
miRNA:   3'- cuUGGAGGuGGGCUGGGaCGUGAuGC- -5'
10820 3' -56.9 NC_002794.1 + 62235 0.72 0.604408
Target:  5'- --uCCUCCGCCUGACgCUgaacguguucGCGCUGCGc -3'
miRNA:   3'- cuuGGAGGUGGGCUGgGA----------CGUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 74481 0.72 0.62438
Target:  5'- aGAGgUUCCGCCCGACCCgacucgGCACc--- -3'
miRNA:   3'- -CUUgGAGGUGGGCUGGGa-----CGUGaugc -5'
10820 3' -56.9 NC_002794.1 + 124623 0.71 0.654361
Target:  5'- uGAGCUUCCugCCGgcGCCCgccaugGUGCUGCa -3'
miRNA:   3'- -CUUGGAGGugGGC--UGGGa-----CGUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 58347 0.71 0.664331
Target:  5'- gGAACCUgCCGCUCGGCCUgGCGCcGCc -3'
miRNA:   3'- -CUUGGA-GGUGGGCUGGGaCGUGaUGc -5'
10820 3' -56.9 NC_002794.1 + 67544 0.71 0.664331
Target:  5'- uGAGcCCUCCGCCCGGgCC-GCGCcGCa -3'
miRNA:   3'- -CUU-GGAGGUGGGCUgGGaCGUGaUGc -5'
10820 3' -56.9 NC_002794.1 + 83212 0.71 0.674276
Target:  5'- cGAGCCUgCACgUGAUCCUcGCGCUcGCGg -3'
miRNA:   3'- -CUUGGAgGUGgGCUGGGA-CGUGA-UGC- -5'
10820 3' -56.9 NC_002794.1 + 43841 0.7 0.723344
Target:  5'- -cACCUCCucacagucccGCUCGGCCCgggGCACguagACGg -3'
miRNA:   3'- cuUGGAGG----------UGGGCUGGGa--CGUGa---UGC- -5'
10820 3' -56.9 NC_002794.1 + 61145 0.7 0.742507
Target:  5'- -uGCUgCCGCCCGACCCcgaGCGC-GCGg -3'
miRNA:   3'- cuUGGaGGUGGGCUGGGa--CGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 130118 0.7 0.751955
Target:  5'- -cGCCUCCGCCUugcgagauauuaGACgCUGCGCgGCGc -3'
miRNA:   3'- cuUGGAGGUGGG------------CUGgGACGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 192358 0.69 0.761302
Target:  5'- cGGCCUCCGCcgccgCCGACCgaGCGCggGCu -3'
miRNA:   3'- cUUGGAGGUG-----GGCUGGgaCGUGa-UGc -5'
10820 3' -56.9 NC_002794.1 + 109514 0.69 0.761302
Target:  5'- ----gUCCGCCCGGCCC-GCGCU-CGu -3'
miRNA:   3'- cuuggAGGUGGGCUGGGaCGUGAuGC- -5'
10820 3' -56.9 NC_002794.1 + 19399 0.69 0.761302
Target:  5'- cAGCCacCCACCCGACCCggaucggGCGCg--- -3'
miRNA:   3'- cUUGGa-GGUGGGCUGGGa------CGUGaugc -5'
10820 3' -56.9 NC_002794.1 + 64667 0.69 0.77966
Target:  5'- aAACCgCgACCCGACuCCUGUGCgacgACGg -3'
miRNA:   3'- cUUGGaGgUGGGCUG-GGACGUGa---UGC- -5'
10820 3' -56.9 NC_002794.1 + 64256 0.69 0.77966
Target:  5'- -cGCCgCCACCCGACCUcuucaUGCAgguggcgcuCUACGc -3'
miRNA:   3'- cuUGGaGGUGGGCUGGG-----ACGU---------GAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.