miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 3' -56.9 NC_002794.1 + 40831 0.69 0.77966
Target:  5'- aGACCggugcgCCugCCGACCUcGCGCUcccaGCGa -3'
miRNA:   3'- cUUGGa-----GGugGGCUGGGaCGUGA----UGC- -5'
10820 3' -56.9 NC_002794.1 + 14160 0.69 0.788653
Target:  5'- cGAGCCccgCCGCCUGAaCCUGCGCcuccgagACGu -3'
miRNA:   3'- -CUUGGa--GGUGGGCUgGGACGUGa------UGC- -5'
10820 3' -56.9 NC_002794.1 + 45898 0.69 0.788653
Target:  5'- cGAGCC-CCGCCCGcCgCCgGCACcggGCGa -3'
miRNA:   3'- -CUUGGaGGUGGGCuG-GGaCGUGa--UGC- -5'
10820 3' -56.9 NC_002794.1 + 144998 0.69 0.788653
Target:  5'- cGGGCgUCCGCCUGGCgCaGCAgCUGCGc -3'
miRNA:   3'- -CUUGgAGGUGGGCUGgGaCGU-GAUGC- -5'
10820 3' -56.9 NC_002794.1 + 79032 0.69 0.797512
Target:  5'- -cGCCUUCugCCGGCCCgGcCGCUcccGCGc -3'
miRNA:   3'- cuUGGAGGugGGCUGGGaC-GUGA---UGC- -5'
10820 3' -56.9 NC_002794.1 + 82514 0.69 0.797512
Target:  5'- aGACCuUCCACUCGAUCCUGgCuucCUGCu -3'
miRNA:   3'- cUUGG-AGGUGGGCUGGGAC-Gu--GAUGc -5'
10820 3' -56.9 NC_002794.1 + 56712 0.69 0.805364
Target:  5'- cAACCUCCGCCucuacuacggcgaCGACCCgaGcCGCUACc -3'
miRNA:   3'- cUUGGAGGUGG-------------GCUGGGa-C-GUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 128864 0.69 0.806229
Target:  5'- -cGCCgcugCCGCCgUGACCCUuugccGCugUACGg -3'
miRNA:   3'- cuUGGa---GGUGG-GCUGGGA-----CGugAUGC- -5'
10820 3' -56.9 NC_002794.1 + 178856 0.68 0.830628
Target:  5'- cGGACCgagCCGCCCG-CCCUuccgacucgauagGUACUcACGg -3'
miRNA:   3'- -CUUGGa--GGUGGGCuGGGA-------------CGUGA-UGC- -5'
10820 3' -56.9 NC_002794.1 + 58536 0.68 0.839514
Target:  5'- aGGCCUUCGCCgCGGCgCgcGCGCUGCu -3'
miRNA:   3'- cUUGGAGGUGG-GCUGgGa-CGUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 68136 0.68 0.847403
Target:  5'- -uGCUgaUCCGCgaGACCCUGCACaACa -3'
miRNA:   3'- cuUGG--AGGUGggCUGGGACGUGaUGc -5'
10820 3' -56.9 NC_002794.1 + 112565 0.68 0.847403
Target:  5'- -cGCCggCCACCCGGCCgCUcuccaGCUGCGc -3'
miRNA:   3'- cuUGGa-GGUGGGCUGG-GAcg---UGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 153955 0.68 0.855106
Target:  5'- ---gCUCUACCCuGGCCCgGCgACUACa -3'
miRNA:   3'- cuugGAGGUGGG-CUGGGaCG-UGAUGc -5'
10820 3' -56.9 NC_002794.1 + 80724 0.68 0.855106
Target:  5'- uGGACgUCgACCUGGCCCUcCGCgACGg -3'
miRNA:   3'- -CUUGgAGgUGGGCUGGGAcGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 127519 0.68 0.855106
Target:  5'- gGGGCUgugCCGCCgCGAUCCUGCug-GCGc -3'
miRNA:   3'- -CUUGGa--GGUGG-GCUGGGACGugaUGC- -5'
10820 3' -56.9 NC_002794.1 + 80601 0.68 0.858133
Target:  5'- aGAACCUgacggacggacucugCCugCCGGCCgaGCACcucGCGa -3'
miRNA:   3'- -CUUGGA---------------GGugGGCUGGgaCGUGa--UGC- -5'
10820 3' -56.9 NC_002794.1 + 19588 0.67 0.862616
Target:  5'- -uGCCUCC-UCCGGCCCgGCGa-GCGg -3'
miRNA:   3'- cuUGGAGGuGGGCUGGGaCGUgaUGC- -5'
10820 3' -56.9 NC_002794.1 + 194498 0.67 0.869927
Target:  5'- --cCCUCCgcGCCCGGCCCgcgGC-CcGCGu -3'
miRNA:   3'- cuuGGAGG--UGGGCUGGGa--CGuGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 59066 0.67 0.874217
Target:  5'- uGGGCCUgCACCUcaaGACCCUGCugguggagcucuuCUACc -3'
miRNA:   3'- -CUUGGAgGUGGG---CUGGGACGu------------GAUGc -5'
10820 3' -56.9 NC_002794.1 + 115371 0.67 0.874925
Target:  5'- -cGCgUCCACCCauuuccugaccgccGGCCC-GUGCUGCGg -3'
miRNA:   3'- cuUGgAGGUGGG--------------CUGGGaCGUGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.