miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 3' -56.9 NC_002794.1 + 63213 0.66 0.897091
Target:  5'- cGACCUgcgcgaCCugCCGcCCCUGCGCcuccGCGc -3'
miRNA:   3'- cUUGGA------GGugGGCuGGGACGUGa---UGC- -5'
10820 3' -56.9 NC_002794.1 + 58808 0.66 0.897091
Target:  5'- -cGCCUCUACCCG-CCCUuccucaaccGC-CUGCc -3'
miRNA:   3'- cuUGGAGGUGGGCuGGGA---------CGuGAUGc -5'
10820 3' -56.9 NC_002794.1 + 80559 0.66 0.897091
Target:  5'- cGGACCcguUCCGCgCCGugCCgacGCACgggcugACGg -3'
miRNA:   3'- -CUUGG---AGGUG-GGCugGGa--CGUGa-----UGC- -5'
10820 3' -56.9 NC_002794.1 + 83583 0.66 0.897091
Target:  5'- -cACCaCCACuCCGACCCcgucGCGCUcCGg -3'
miRNA:   3'- cuUGGaGGUG-GGCUGGGa---CGUGAuGC- -5'
10820 3' -56.9 NC_002794.1 + 81508 0.67 0.890621
Target:  5'- -cGCC-CCACCCuGCCgaGCcuACUGCGa -3'
miRNA:   3'- cuUGGaGGUGGGcUGGgaCG--UGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 19052 0.67 0.890621
Target:  5'- -cACCUUCACCCuGACCgcCUGCGgUcACGg -3'
miRNA:   3'- cuUGGAGGUGGG-CUGG--GACGUgA-UGC- -5'
10820 3' -56.9 NC_002794.1 + 108209 0.67 0.890621
Target:  5'- -cGCCgCCGCgCCGGCCUcGCGCccUGCGg -3'
miRNA:   3'- cuUGGaGGUG-GGCUGGGaCGUG--AUGC- -5'
10820 3' -56.9 NC_002794.1 + 90211 0.67 0.890621
Target:  5'- -cGCCUCCGCCCGccgcgccggaGCCCcGC-CUGUGg -3'
miRNA:   3'- cuUGGAGGUGGGC----------UGGGaCGuGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 123916 0.67 0.890621
Target:  5'- -cGCCUCgCGCCgGACCUgcccccggGCACcGCGu -3'
miRNA:   3'- cuUGGAG-GUGGgCUGGGa-------CGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 146407 0.67 0.890621
Target:  5'- cGAUCgUCCGCCCGcACCaUGgACUACGc -3'
miRNA:   3'- cUUGG-AGGUGGGC-UGGgACgUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 16357 0.67 0.883935
Target:  5'- cGGCg-CCACCCGcACCCgcgUGCACgGCGg -3'
miRNA:   3'- cUUGgaGGUGGGC-UGGG---ACGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 120966 0.67 0.883935
Target:  5'- cGACCUCgGCCCGGCC-UGCGaguuCGu -3'
miRNA:   3'- cUUGGAGgUGGGCUGGgACGUgau-GC- -5'
10820 3' -56.9 NC_002794.1 + 23932 0.67 0.883935
Target:  5'- cGAGCgaUCCgaGCCCGGCCgCggcGCACUugGc -3'
miRNA:   3'- -CUUGg-AGG--UGGGCUGG-Ga--CGUGAugC- -5'
10820 3' -56.9 NC_002794.1 + 83314 0.67 0.877035
Target:  5'- cGAcCCUCgGC---ACCCUGCGCUACGc -3'
miRNA:   3'- -CUuGGAGgUGggcUGGGACGUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 191419 0.67 0.877035
Target:  5'- -cACCcCCACCCGACCCgGguCcgGCu -3'
miRNA:   3'- cuUGGaGGUGGGCUGGGaCguGa-UGc -5'
10820 3' -56.9 NC_002794.1 + 115371 0.67 0.874925
Target:  5'- -cGCgUCCACCCauuuccugaccgccGGCCC-GUGCUGCGg -3'
miRNA:   3'- cuUGgAGGUGGG--------------CUGGGaCGUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 59066 0.67 0.874217
Target:  5'- uGGGCCUgCACCUcaaGACCCUGCugguggagcucuuCUACc -3'
miRNA:   3'- -CUUGGAgGUGGG---CUGGGACGu------------GAUGc -5'
10820 3' -56.9 NC_002794.1 + 194498 0.67 0.869927
Target:  5'- --cCCUCCgcGCCCGGCCCgcgGC-CcGCGu -3'
miRNA:   3'- cuuGGAGG--UGGGCUGGGa--CGuGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 19588 0.67 0.862616
Target:  5'- -uGCCUCC-UCCGGCCCgGCGa-GCGg -3'
miRNA:   3'- cuUGGAGGuGGGCUGGGaCGUgaUGC- -5'
10820 3' -56.9 NC_002794.1 + 80601 0.68 0.858133
Target:  5'- aGAACCUgacggacggacucugCCugCCGGCCgaGCACcucGCGa -3'
miRNA:   3'- -CUUGGA---------------GGugGGCUGGgaCGUGa--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.