Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10820 | 3' | -56.9 | NC_002794.1 | + | 80724 | 0.68 | 0.855106 |
Target: 5'- uGGACgUCgACCUGGCCCUcCGCgACGg -3' miRNA: 3'- -CUUGgAGgUGGGCUGGGAcGUGaUGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 153955 | 0.68 | 0.855106 |
Target: 5'- ---gCUCUACCCuGGCCCgGCgACUACa -3' miRNA: 3'- cuugGAGGUGGG-CUGGGaCG-UGAUGc -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 127519 | 0.68 | 0.855106 |
Target: 5'- gGGGCUgugCCGCCgCGAUCCUGCug-GCGc -3' miRNA: 3'- -CUUGGa--GGUGG-GCUGGGACGugaUGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 112565 | 0.68 | 0.847403 |
Target: 5'- -cGCCggCCACCCGGCCgCUcuccaGCUGCGc -3' miRNA: 3'- cuUGGa-GGUGGGCUGG-GAcg---UGAUGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 68136 | 0.68 | 0.847403 |
Target: 5'- -uGCUgaUCCGCgaGACCCUGCACaACa -3' miRNA: 3'- cuUGG--AGGUGggCUGGGACGUGaUGc -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 58536 | 0.68 | 0.839514 |
Target: 5'- aGGCCUUCGCCgCGGCgCgcGCGCUGCu -3' miRNA: 3'- cUUGGAGGUGG-GCUGgGa-CGUGAUGc -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 178856 | 0.68 | 0.830628 |
Target: 5'- cGGACCgagCCGCCCG-CCCUuccgacucgauagGUACUcACGg -3' miRNA: 3'- -CUUGGa--GGUGGGCuGGGA-------------CGUGA-UGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 128864 | 0.69 | 0.806229 |
Target: 5'- -cGCCgcugCCGCCgUGACCCUuugccGCugUACGg -3' miRNA: 3'- cuUGGa---GGUGG-GCUGGGA-----CGugAUGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 56712 | 0.69 | 0.805364 |
Target: 5'- cAACCUCCGCCucuacuacggcgaCGACCCgaGcCGCUACc -3' miRNA: 3'- cUUGGAGGUGG-------------GCUGGGa-C-GUGAUGc -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 79032 | 0.69 | 0.797512 |
Target: 5'- -cGCCUUCugCCGGCCCgGcCGCUcccGCGc -3' miRNA: 3'- cuUGGAGGugGGCUGGGaC-GUGA---UGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 82514 | 0.69 | 0.797512 |
Target: 5'- aGACCuUCCACUCGAUCCUGgCuucCUGCu -3' miRNA: 3'- cUUGG-AGGUGGGCUGGGAC-Gu--GAUGc -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 45898 | 0.69 | 0.788653 |
Target: 5'- cGAGCC-CCGCCCGcCgCCgGCACcggGCGa -3' miRNA: 3'- -CUUGGaGGUGGGCuG-GGaCGUGa--UGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 14160 | 0.69 | 0.788653 |
Target: 5'- cGAGCCccgCCGCCUGAaCCUGCGCcuccgagACGu -3' miRNA: 3'- -CUUGGa--GGUGGGCUgGGACGUGa------UGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 144998 | 0.69 | 0.788653 |
Target: 5'- cGGGCgUCCGCCUGGCgCaGCAgCUGCGc -3' miRNA: 3'- -CUUGgAGGUGGGCUGgGaCGU-GAUGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 64667 | 0.69 | 0.77966 |
Target: 5'- aAACCgCgACCCGACuCCUGUGCgacgACGg -3' miRNA: 3'- cUUGGaGgUGGGCUG-GGACGUGa---UGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 64256 | 0.69 | 0.77966 |
Target: 5'- -cGCCgCCACCCGACCUcuucaUGCAgguggcgcuCUACGc -3' miRNA: 3'- cuUGGaGGUGGGCUGGG-----ACGU---------GAUGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 40831 | 0.69 | 0.77966 |
Target: 5'- aGACCggugcgCCugCCGACCUcGCGCUcccaGCGa -3' miRNA: 3'- cUUGGa-----GGugGGCUGGGaCGUGA----UGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 109514 | 0.69 | 0.761302 |
Target: 5'- ----gUCCGCCCGGCCC-GCGCU-CGu -3' miRNA: 3'- cuuggAGGUGGGCUGGGaCGUGAuGC- -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 192358 | 0.69 | 0.761302 |
Target: 5'- cGGCCUCCGCcgccgCCGACCgaGCGCggGCu -3' miRNA: 3'- cUUGGAGGUG-----GGCUGGgaCGUGa-UGc -5' |
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10820 | 3' | -56.9 | NC_002794.1 | + | 19399 | 0.69 | 0.761302 |
Target: 5'- cAGCCacCCACCCGACCCggaucggGCGCg--- -3' miRNA: 3'- cUUGGa-GGUGGGCUGGGa------CGUGaugc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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