miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 3' -56.9 NC_002794.1 + 14160 0.69 0.788653
Target:  5'- cGAGCCccgCCGCCUGAaCCUGCGCcuccgagACGu -3'
miRNA:   3'- -CUUGGa--GGUGGGCUgGGACGUGa------UGC- -5'
10820 3' -56.9 NC_002794.1 + 16357 0.67 0.883935
Target:  5'- cGGCg-CCACCCGcACCCgcgUGCACgGCGg -3'
miRNA:   3'- cUUGgaGGUGGGC-UGGG---ACGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 19052 0.67 0.890621
Target:  5'- -cACCUUCACCCuGACCgcCUGCGgUcACGg -3'
miRNA:   3'- cuUGGAGGUGGG-CUGG--GACGUgA-UGC- -5'
10820 3' -56.9 NC_002794.1 + 19399 0.69 0.761302
Target:  5'- cAGCCacCCACCCGACCCggaucggGCGCg--- -3'
miRNA:   3'- cUUGGa-GGUGGGCUGGGa------CGUGaugc -5'
10820 3' -56.9 NC_002794.1 + 19588 0.67 0.862616
Target:  5'- -uGCCUCC-UCCGGCCCgGCGa-GCGg -3'
miRNA:   3'- cuUGGAGGuGGGCUGGGaCGUgaUGC- -5'
10820 3' -56.9 NC_002794.1 + 20841 0.76 0.407887
Target:  5'- -cACCcgCCACCUGAUCCUGCGCU-CGu -3'
miRNA:   3'- cuUGGa-GGUGGGCUGGGACGUGAuGC- -5'
10820 3' -56.9 NC_002794.1 + 23932 0.67 0.883935
Target:  5'- cGAGCgaUCCgaGCCCGGCCgCggcGCACUugGc -3'
miRNA:   3'- -CUUGg-AGG--UGGGCUGG-Ga--CGUGAugC- -5'
10820 3' -56.9 NC_002794.1 + 24178 0.66 0.90334
Target:  5'- cGGCCUCgACCCcgcggcaccgaGACCgaGCGCgGCGg -3'
miRNA:   3'- cUUGGAGgUGGG-----------CUGGgaCGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 37176 0.66 0.911131
Target:  5'- gGGACCUCCaguuucccgcacgcGCCCacgacgucgggcaGCCC-GCACUGCGa -3'
miRNA:   3'- -CUUGGAGG--------------UGGGc------------UGGGaCGUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 38255 0.66 0.915168
Target:  5'- gGGGCCUCCugCgugaggcgCGGCCCccGCGCgACGu -3'
miRNA:   3'- -CUUGGAGGugG--------GCUGGGa-CGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 39687 0.66 0.909366
Target:  5'- -cGCUUCUucgucGCCCGGCaCCgccgGCGCUACc -3'
miRNA:   3'- cuUGGAGG-----UGGGCUG-GGa---CGUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 40831 0.69 0.77966
Target:  5'- aGACCggugcgCCugCCGACCUcGCGCUcccaGCGa -3'
miRNA:   3'- cUUGGa-----GGugGGCUGGGaCGUGA----UGC- -5'
10820 3' -56.9 NC_002794.1 + 43841 0.7 0.723344
Target:  5'- -cACCUCCucacagucccGCUCGGCCCgggGCACguagACGg -3'
miRNA:   3'- cuUGGAGG----------UGGGCUGGGa--CGUGa---UGC- -5'
10820 3' -56.9 NC_002794.1 + 45898 0.69 0.788653
Target:  5'- cGAGCC-CCGCCCGcCgCCgGCACcggGCGa -3'
miRNA:   3'- -CUUGGaGGUGGGCuG-GGaCGUGa--UGC- -5'
10820 3' -56.9 NC_002794.1 + 50797 0.66 0.897091
Target:  5'- -cGCCUCCucGCCCGGCgUCggGCGCUcCGg -3'
miRNA:   3'- cuUGGAGG--UGGGCUG-GGa-CGUGAuGC- -5'
10820 3' -56.9 NC_002794.1 + 51455 0.66 0.920742
Target:  5'- aGAAUUUCCACCUGcUCCUGguCgACGa -3'
miRNA:   3'- -CUUGGAGGUGGGCuGGGACguGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 56712 0.69 0.805364
Target:  5'- cAACCUCCGCCucuacuacggcgaCGACCCgaGcCGCUACc -3'
miRNA:   3'- cUUGGAGGUGG-------------GCUGGGa-C-GUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 58347 0.71 0.664331
Target:  5'- gGAACCUgCCGCUCGGCCUgGCGCcGCc -3'
miRNA:   3'- -CUUGGA-GGUGGGCUGGGaCGUGaUGc -5'
10820 3' -56.9 NC_002794.1 + 58536 0.68 0.839514
Target:  5'- aGGCCUUCGCCgCGGCgCgcGCGCUGCu -3'
miRNA:   3'- cUUGGAGGUGG-GCUGgGa-CGUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 58808 0.66 0.897091
Target:  5'- -cGCCUCUACCCG-CCCUuccucaaccGC-CUGCc -3'
miRNA:   3'- cuUGGAGGUGGGCuGGGA---------CGuGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.