miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 3' -56.9 NC_002794.1 + 59066 0.67 0.874217
Target:  5'- uGGGCCUgCACCUcaaGACCCUGCugguggagcucuuCUACc -3'
miRNA:   3'- -CUUGGAgGUGGG---CUGGGACGu------------GAUGc -5'
10820 3' -56.9 NC_002794.1 + 61145 0.7 0.742507
Target:  5'- -uGCUgCCGCCCGACCCcgaGCGC-GCGg -3'
miRNA:   3'- cuUGGaGGUGGGCUGGGa--CGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 62235 0.72 0.604408
Target:  5'- --uCCUCCGCCUGACgCUgaacguguucGCGCUGCGc -3'
miRNA:   3'- cuuGGAGGUGGGCUGgGA----------CGUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 63213 0.66 0.897091
Target:  5'- cGACCUgcgcgaCCugCCGcCCCUGCGCcuccGCGc -3'
miRNA:   3'- cUUGGA------GGugGGCuGGGACGUGa---UGC- -5'
10820 3' -56.9 NC_002794.1 + 64061 1.08 0.003522
Target:  5'- cGAACCUCCACCCGACCCUGCACUACGu -3'
miRNA:   3'- -CUUGGAGGUGGGCUGGGACGUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 64256 0.69 0.77966
Target:  5'- -cGCCgCCACCCGACCUcuucaUGCAgguggcgcuCUACGc -3'
miRNA:   3'- cuUGGaGGUGGGCUGGG-----ACGU---------GAUGC- -5'
10820 3' -56.9 NC_002794.1 + 64667 0.69 0.77966
Target:  5'- aAACCgCgACCCGACuCCUGUGCgacgACGg -3'
miRNA:   3'- cUUGGaGgUGGGCUG-GGACGUGa---UGC- -5'
10820 3' -56.9 NC_002794.1 + 67544 0.71 0.664331
Target:  5'- uGAGcCCUCCGCCCGGgCC-GCGCcGCa -3'
miRNA:   3'- -CUU-GGAGGUGGGCUgGGaCGUGaUGc -5'
10820 3' -56.9 NC_002794.1 + 68136 0.68 0.847403
Target:  5'- -uGCUgaUCCGCgaGACCCUGCACaACa -3'
miRNA:   3'- cuUGG--AGGUGggCUGGGACGUGaUGc -5'
10820 3' -56.9 NC_002794.1 + 72710 0.66 0.926089
Target:  5'- cGGGCCgaCCACCgugcccaugaCGGCCCcGCGCUcccGCGg -3'
miRNA:   3'- -CUUGGa-GGUGG----------GCUGGGaCGUGA---UGC- -5'
10820 3' -56.9 NC_002794.1 + 74481 0.72 0.62438
Target:  5'- aGAGgUUCCGCCCGACCCgacucgGCACc--- -3'
miRNA:   3'- -CUUgGAGGUGGGCUGGGa-----CGUGaugc -5'
10820 3' -56.9 NC_002794.1 + 79032 0.69 0.797512
Target:  5'- -cGCCUUCugCCGGCCCgGcCGCUcccGCGc -3'
miRNA:   3'- cuUGGAGGugGGCUGGGaC-GUGA---UGC- -5'
10820 3' -56.9 NC_002794.1 + 80559 0.66 0.897091
Target:  5'- cGGACCcguUCCGCgCCGugCCgacGCACgggcugACGg -3'
miRNA:   3'- -CUUGG---AGGUG-GGCugGGa--CGUGa-----UGC- -5'
10820 3' -56.9 NC_002794.1 + 80601 0.68 0.858133
Target:  5'- aGAACCUgacggacggacucugCCugCCGGCCgaGCACcucGCGa -3'
miRNA:   3'- -CUUGGA---------------GGugGGCUGGgaCGUGa--UGC- -5'
10820 3' -56.9 NC_002794.1 + 80724 0.68 0.855106
Target:  5'- uGGACgUCgACCUGGCCCUcCGCgACGg -3'
miRNA:   3'- -CUUGgAGgUGGGCUGGGAcGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 80769 0.66 0.920742
Target:  5'- cGGACCUCUucgACCUGugucgccaCCUGCGCcGCGu -3'
miRNA:   3'- -CUUGGAGG---UGGGCug------GGACGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 81508 0.67 0.890621
Target:  5'- -cGCC-CCACCCuGCCgaGCcuACUGCGa -3'
miRNA:   3'- cuUGGaGGUGGGcUGGgaCG--UGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 82514 0.69 0.797512
Target:  5'- aGACCuUCCACUCGAUCCUGgCuucCUGCu -3'
miRNA:   3'- cUUGG-AGGUGGGCUGGGAC-Gu--GAUGc -5'
10820 3' -56.9 NC_002794.1 + 83212 0.71 0.674276
Target:  5'- cGAGCCUgCACgUGAUCCUcGCGCUcGCGg -3'
miRNA:   3'- -CUUGGAgGUGgGCUGGGA-CGUGA-UGC- -5'
10820 3' -56.9 NC_002794.1 + 83314 0.67 0.877035
Target:  5'- cGAcCCUCgGC---ACCCUGCGCUACGc -3'
miRNA:   3'- -CUuGGAGgUGggcUGGGACGUGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.