miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 3' -56.9 NC_002794.1 + 194498 0.67 0.869927
Target:  5'- --cCCUCCgcGCCCGGCCCgcgGC-CcGCGu -3'
miRNA:   3'- cuuGGAGG--UGGGCUGGGa--CGuGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 192358 0.69 0.761302
Target:  5'- cGGCCUCCGCcgccgCCGACCgaGCGCggGCu -3'
miRNA:   3'- cUUGGAGGUG-----GGCUGGgaCGUGa-UGc -5'
10820 3' -56.9 NC_002794.1 + 191419 0.67 0.877035
Target:  5'- -cACCcCCACCCGACCCgGguCcgGCu -3'
miRNA:   3'- cuUGGaGGUGGGCUGGGaCguGa-UGc -5'
10820 3' -56.9 NC_002794.1 + 184172 0.73 0.535459
Target:  5'- --gUCUCCACCCGACaCCgcgGCGCccgGCGa -3'
miRNA:   3'- cuuGGAGGUGGGCUG-GGa--CGUGa--UGC- -5'
10820 3' -56.9 NC_002794.1 + 183364 0.66 0.902725
Target:  5'- cGGACC-CCAgguCCCGGCCgUGCcccgucccgccgaGCUGCa -3'
miRNA:   3'- -CUUGGaGGU---GGGCUGGgACG-------------UGAUGc -5'
10820 3' -56.9 NC_002794.1 + 181152 0.66 0.897091
Target:  5'- -cGCCUCCAgCCCGuCCgCcGCGCcgACGg -3'
miRNA:   3'- cuUGGAGGU-GGGCuGG-GaCGUGa-UGC- -5'
10820 3' -56.9 NC_002794.1 + 178856 0.68 0.830628
Target:  5'- cGGACCgagCCGCCCG-CCCUuccgacucgauagGUACUcACGg -3'
miRNA:   3'- -CUUGGa--GGUGGGCuGGGA-------------CGUGA-UGC- -5'
10820 3' -56.9 NC_002794.1 + 176185 0.66 0.920742
Target:  5'- uGGACC-CCA-CCGACgCUGUACgggugGCGg -3'
miRNA:   3'- -CUUGGaGGUgGGCUGgGACGUGa----UGC- -5'
10820 3' -56.9 NC_002794.1 + 153955 0.68 0.855106
Target:  5'- ---gCUCUACCCuGGCCCgGCgACUACa -3'
miRNA:   3'- cuugGAGGUGGG-CUGGGaCG-UGAUGc -5'
10820 3' -56.9 NC_002794.1 + 153258 0.66 0.897091
Target:  5'- -cACUUUUACCUGGCCCaGguCUACGc -3'
miRNA:   3'- cuUGGAGGUGGGCUGGGaCguGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 152297 0.66 0.897091
Target:  5'- gGAACC-CCGgCgGGCUCUcGCACUACc -3'
miRNA:   3'- -CUUGGaGGUgGgCUGGGA-CGUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 146407 0.67 0.890621
Target:  5'- cGAUCgUCCGCCCGcACCaUGgACUACGc -3'
miRNA:   3'- cUUGG-AGGUGGGC-UGGgACgUGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 144998 0.69 0.788653
Target:  5'- cGGGCgUCCGCCUGGCgCaGCAgCUGCGc -3'
miRNA:   3'- -CUUGgAGGUGGGCUGgGaCGU-GAUGC- -5'
10820 3' -56.9 NC_002794.1 + 138557 0.66 0.926089
Target:  5'- -cGCCUCCGCCCGcuccgucgucGCUCgaucgagGCGCgucgGCGc -3'
miRNA:   3'- cuUGGAGGUGGGC----------UGGGa------CGUGa---UGC- -5'
10820 3' -56.9 NC_002794.1 + 130118 0.7 0.751955
Target:  5'- -cGCCUCCGCCUugcgagauauuaGACgCUGCGCgGCGc -3'
miRNA:   3'- cuUGGAGGUGGG------------CUGgGACGUGaUGC- -5'
10820 3' -56.9 NC_002794.1 + 128864 0.69 0.806229
Target:  5'- -cGCCgcugCCGCCgUGACCCUuugccGCugUACGg -3'
miRNA:   3'- cuUGGa---GGUGG-GCUGGGA-----CGugAUGC- -5'
10820 3' -56.9 NC_002794.1 + 127519 0.68 0.855106
Target:  5'- gGGGCUgugCCGCCgCGAUCCUGCug-GCGc -3'
miRNA:   3'- -CUUGGa--GGUGG-GCUGGGACGugaUGC- -5'
10820 3' -56.9 NC_002794.1 + 125174 0.86 0.100063
Target:  5'- aGAACUUCCACCUGGCCCUGacgaACUGCGc -3'
miRNA:   3'- -CUUGGAGGUGGGCUGGGACg---UGAUGC- -5'
10820 3' -56.9 NC_002794.1 + 124623 0.71 0.654361
Target:  5'- uGAGCUUCCugCCGgcGCCCgccaugGUGCUGCa -3'
miRNA:   3'- -CUUGGAGGugGGC--UGGGa-----CGUGAUGc -5'
10820 3' -56.9 NC_002794.1 + 123916 0.67 0.890621
Target:  5'- -cGCCUCgCGCCgGACCUgcccccggGCACcGCGu -3'
miRNA:   3'- cuUGGAG-GUGGgCUGGGa-------CGUGaUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.