miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 5' -60.4 NC_002794.1 + 104500 0.66 0.817072
Target:  5'- --gGCCGggucggGCgagaacgggcugAGGCGCGGgUGGCGCGg -3'
miRNA:   3'- cagUGGCa-----CG------------UCUGCGCUgGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 95759 0.66 0.817072
Target:  5'- cUCGCgGggcgGCGgccgcGACgGCGGCCGGgGCGa -3'
miRNA:   3'- cAGUGgCa---CGU-----CUG-CGCUGGCCgCGC- -5'
10820 5' -60.4 NC_002794.1 + 154337 0.66 0.816251
Target:  5'- cGUC-CCG-GguGcCGCGGCCGagcucccGCGCGg -3'
miRNA:   3'- -CAGuGGCaCguCuGCGCUGGC-------CGCGC- -5'
10820 5' -60.4 NC_002794.1 + 30724 0.66 0.816251
Target:  5'- aUCAUCGgacuccGCccgaacuGGcCGCGGCUGGCGCGc -3'
miRNA:   3'- cAGUGGCa-----CG-------UCuGCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 99539 0.66 0.808789
Target:  5'- ---uCUGUGCGGGcCGCGgaaACCGcGCGCGc -3'
miRNA:   3'- caguGGCACGUCU-GCGC---UGGC-CGCGC- -5'
10820 5' -60.4 NC_002794.1 + 92655 0.66 0.808789
Target:  5'- cUCAUCGUGCAGAaccugGCG-CUGGUgaGCGc -3'
miRNA:   3'- cAGUGGCACGUCUg----CGCuGGCCG--CGC- -5'
10820 5' -60.4 NC_002794.1 + 143393 0.66 0.808789
Target:  5'- gGUCAgC-UGCu-GCuCGACCGGCGCGg -3'
miRNA:   3'- -CAGUgGcACGucUGcGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 145922 0.66 0.808789
Target:  5'- -gCGCCGaGCGGAgG-GGCCGGCGa- -3'
miRNA:   3'- caGUGGCaCGUCUgCgCUGGCCGCgc -5'
10820 5' -60.4 NC_002794.1 + 113878 0.66 0.808789
Target:  5'- -gCGCuCGgccGCGGcGCGCG-UCGGCGCGg -3'
miRNA:   3'- caGUG-GCa--CGUC-UGCGCuGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 32868 0.66 0.808789
Target:  5'- --aGCCG-GCGGGCgGCGGCggCGGCgGCGg -3'
miRNA:   3'- cagUGGCaCGUCUG-CGCUG--GCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 89531 0.66 0.800362
Target:  5'- aGUCGgCGgaggcaGCAGACGCGACggaGGaGCGu -3'
miRNA:   3'- -CAGUgGCa-----CGUCUGCGCUGg--CCgCGC- -5'
10820 5' -60.4 NC_002794.1 + 64811 0.66 0.800362
Target:  5'- -aCGCC--GCGGACgGCGgcgaGCCGGCGCc -3'
miRNA:   3'- caGUGGcaCGUCUG-CGC----UGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 72526 0.66 0.800362
Target:  5'- -cCACCucgaaGUAGACGCG-CCGcGCGUGg -3'
miRNA:   3'- caGUGGca---CGUCUGCGCuGGC-CGCGC- -5'
10820 5' -60.4 NC_002794.1 + 21996 0.66 0.800362
Target:  5'- cGUCGCCG-GCAaGC-CGGCCaaGGCGUGc -3'
miRNA:   3'- -CAGUGGCaCGUcUGcGCUGG--CCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 82673 0.66 0.800362
Target:  5'- -gCGCCG-GCGGAuCGCacgccguucGcCCGGCGCGc -3'
miRNA:   3'- caGUGGCaCGUCU-GCG---------CuGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 75365 0.66 0.800362
Target:  5'- -cCACCGacCcGcCGCGGCCGGCgGCGg -3'
miRNA:   3'- caGUGGCacGuCuGCGCUGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 130123 0.66 0.800362
Target:  5'- -cCGCCuUGCgagauauuAGACGCuGCgCGGCGCGa -3'
miRNA:   3'- caGUGGcACG--------UCUGCGcUG-GCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 142140 0.66 0.800362
Target:  5'- -cCGCCGggucacgGCGGAgGCGgcgguagcACCGGCaGCGu -3'
miRNA:   3'- caGUGGCa------CGUCUgCGC--------UGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 92260 0.66 0.791797
Target:  5'- cGUCGCUGgcgGCGG-CGCcgGGCgaGGCGCGc -3'
miRNA:   3'- -CAGUGGCa--CGUCuGCG--CUGg-CCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 80405 0.66 0.791797
Target:  5'- cUCGCCGcgGCccaGGugGCG-CCGG-GCGg -3'
miRNA:   3'- cAGUGGCa-CG---UCugCGCuGGCCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.