miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 5' -60.4 NC_002794.1 + 64095 1.08 0.002069
Target:  5'- aGUCACCGUGCAGACGCGACCGGCGCGu -3'
miRNA:   3'- -CAGUGGCACGUCUGCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 74369 0.85 0.070646
Target:  5'- -aCGCCGUGCuucGGGgGCGGCCGGCGCGa -3'
miRNA:   3'- caGUGGCACG---UCUgCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 71222 0.81 0.125858
Target:  5'- gGUCccgGCCGcGUAGugGCGGCCGGCGUGg -3'
miRNA:   3'- -CAG---UGGCaCGUCugCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 100312 0.8 0.160695
Target:  5'- -cCGCCGcugGCAcGCGCGGCCGGCGCa -3'
miRNA:   3'- caGUGGCa--CGUcUGCGCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 180353 0.79 0.181201
Target:  5'- aUCGCCacGCAGAgGaCGACCGGCGCGa -3'
miRNA:   3'- cAGUGGcaCGUCUgC-GCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 65923 0.77 0.229225
Target:  5'- cGUCGCCGgcgGCGGugGCG-UCGGCgGCGg -3'
miRNA:   3'- -CAGUGGCa--CGUCugCGCuGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 40332 0.77 0.234578
Target:  5'- -cCGCCGcGCGGACGCGccACCGGCgGCGc -3'
miRNA:   3'- caGUGGCaCGUCUGCGC--UGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 57395 0.76 0.262932
Target:  5'- cGUCACCGgcuccgGCGcccGCGUGGCCGGCGUGc -3'
miRNA:   3'- -CAGUGGCa-----CGUc--UGCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 142472 0.76 0.268926
Target:  5'- -gCGCCGgcaccGUGGACGCGugCGGCGCc -3'
miRNA:   3'- caGUGGCa----CGUCUGCGCugGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 66735 0.76 0.27503
Target:  5'- -cCGCCG-GCGGugGCGG-CGGCGCGu -3'
miRNA:   3'- caGUGGCaCGUCugCGCUgGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 185171 0.76 0.281245
Target:  5'- -cCGCCG-GCGcGGCGCGGUCGGCGCGg -3'
miRNA:   3'- caGUGGCaCGU-CUGCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 192420 0.76 0.287571
Target:  5'- -aCGCCGcGaCGGGucCGCGGCCGGCGCGu -3'
miRNA:   3'- caGUGGCaC-GUCU--GCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 115031 0.76 0.287571
Target:  5'- -cCACCGUcuGCAGGUGCGACCGG-GCGg -3'
miRNA:   3'- caGUGGCA--CGUCUGCGCUGGCCgCGC- -5'
10820 5' -60.4 NC_002794.1 + 56316 0.75 0.294008
Target:  5'- gGUCGCUG-GCGGcCGUGGCCGGCGaCGc -3'
miRNA:   3'- -CAGUGGCaCGUCuGCGCUGGCCGC-GC- -5'
10820 5' -60.4 NC_002794.1 + 91242 0.75 0.320876
Target:  5'- --gGCCGUcgggcugcgcucGCGGACGCcguucgugGACCGGCGCGg -3'
miRNA:   3'- cagUGGCA------------CGUCUGCG--------CUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 141599 0.75 0.320876
Target:  5'- cGUCGCCGgGCGGcucgGCGACCGGCucGCGg -3'
miRNA:   3'- -CAGUGGCaCGUCug--CGCUGGCCG--CGC- -5'
10820 5' -60.4 NC_002794.1 + 185081 0.75 0.327874
Target:  5'- cGUCGCCGUaGCAGGCGUaccaGCCGGuCGUGu -3'
miRNA:   3'- -CAGUGGCA-CGUCUGCGc---UGGCC-GCGC- -5'
10820 5' -60.4 NC_002794.1 + 123686 0.75 0.327874
Target:  5'- --gGCUGggaGCAGGCGCGACUGGCGgGc -3'
miRNA:   3'- cagUGGCa--CGUCUGCGCUGGCCGCgC- -5'
10820 5' -60.4 NC_002794.1 + 113156 0.74 0.349541
Target:  5'- cGUCAgCGUGUAGcgcGCGCGGgCGGCgGCGg -3'
miRNA:   3'- -CAGUgGCACGUC---UGCGCUgGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 131020 0.74 0.372208
Target:  5'- gGUCGguggUCGUGCGG-CGCGGCCGGCuGCc -3'
miRNA:   3'- -CAGU----GGCACGUCuGCGCUGGCCG-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.