miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 5' -60.4 NC_002794.1 + 38088 0.74 0.372208
Target:  5'- -aCACgGU-CAG-CGCGACCGGCGUGa -3'
miRNA:   3'- caGUGgCAcGUCuGCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 107220 0.74 0.379983
Target:  5'- -cCGCCGgGCGGcGCGCGACgGGgGCGg -3'
miRNA:   3'- caGUGGCaCGUC-UGCGCUGgCCgCGC- -5'
10820 5' -60.4 NC_002794.1 + 49015 0.73 0.40395
Target:  5'- -gCGCCGcgGCGGcCGCGGcgucguCCGGCGCGg -3'
miRNA:   3'- caGUGGCa-CGUCuGCGCU------GGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 58541 0.73 0.40395
Target:  5'- uUCGCCGcgGCGcGCGCGcuGCUGGCGCGc -3'
miRNA:   3'- cAGUGGCa-CGUcUGCGC--UGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 37263 0.73 0.412149
Target:  5'- cUCuCCGUcgGCGGGCGCG-CgGGCGCGg -3'
miRNA:   3'- cAGuGGCA--CGUCUGCGCuGgCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 105520 0.73 0.42045
Target:  5'- -gCGCCGUccgaaGCGGACGUGAgauCCGGCgGCGg -3'
miRNA:   3'- caGUGGCA-----CGUCUGCGCU---GGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 68935 0.73 0.42045
Target:  5'- cGUCGCCc-GCGGGcCGCGgcGCCGGCGCc -3'
miRNA:   3'- -CAGUGGcaCGUCU-GCGC--UGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 112096 0.73 0.42045
Target:  5'- cGUUGCgCGUcCAGGCGCGGCCgggacgacGGCGCGg -3'
miRNA:   3'- -CAGUG-GCAcGUCUGCGCUGG--------CCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 62332 0.72 0.43735
Target:  5'- cUCGCUG-GCGGAgccCGCG-CCGGCGCa -3'
miRNA:   3'- cAGUGGCaCGUCU---GCGCuGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 79433 0.72 0.43735
Target:  5'- ---cCCGgcgGCGGcgGCgGCGACCGGCGCGg -3'
miRNA:   3'- caguGGCa--CGUC--UG-CGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 77006 0.72 0.43735
Target:  5'- cGUCACCG---GGAUGCcGCCGGCGCa -3'
miRNA:   3'- -CAGUGGCacgUCUGCGcUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 116004 0.72 0.43735
Target:  5'- --gACCGcggagaccGCGGugGCGAUUGGCGCGg -3'
miRNA:   3'- cagUGGCa-------CGUCugCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 62076 0.72 0.445946
Target:  5'- -aCGCCGgcgGCGacGACgGCGACgCGGCGCGc -3'
miRNA:   3'- caGUGGCa--CGU--CUG-CGCUG-GCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 101680 0.72 0.453761
Target:  5'- -aCGCCG-GCGGAgCGCGagcccgaGCCGGCGCc -3'
miRNA:   3'- caGUGGCaCGUCU-GCGC-------UGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 49454 0.72 0.454634
Target:  5'- cGUCGCCGUgGCGccGcCGUGACCGGCcgccGCGg -3'
miRNA:   3'- -CAGUGGCA-CGU--CuGCGCUGGCCG----CGC- -5'
10820 5' -60.4 NC_002794.1 + 185762 0.72 0.454634
Target:  5'- -cCGCCGgcGCGGccgcccgucacACGuCGGCCGGCGCGg -3'
miRNA:   3'- caGUGGCa-CGUC-----------UGC-GCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 262 0.72 0.463414
Target:  5'- -cCGCCGcgcgcGCGGACGCGAggacggcggccCUGGCGCGc -3'
miRNA:   3'- caGUGGCa----CGUCUGCGCU-----------GGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 180293 0.71 0.49938
Target:  5'- -gCGCCGccGCAacACGcCGGCCGGCGCGa -3'
miRNA:   3'- caGUGGCa-CGUc-UGC-GCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 108177 0.71 0.508566
Target:  5'- -aCGCCGcgacgcGCGGACuGCGAgCGGCGCu -3'
miRNA:   3'- caGUGGCa-----CGUCUG-CGCUgGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 32301 0.71 0.508566
Target:  5'- -cCGCCGcgGCGGcCGCG-CCGGcCGCGg -3'
miRNA:   3'- caGUGGCa-CGUCuGCGCuGGCC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.