miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 5' -60.4 NC_002794.1 + 137640 0.66 0.791797
Target:  5'- cGUC-CUG-GCGGGCGCcgggccuCCGGCGCc -3'
miRNA:   3'- -CAGuGGCaCGUCUGCGcu-----GGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 92992 0.66 0.791797
Target:  5'- cGUCAgCGUGUucuucaaGCGCGACgUGGUGCa -3'
miRNA:   3'- -CAGUgGCACGuc-----UGCGCUG-GCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 80405 0.66 0.791797
Target:  5'- cUCGCCGcgGCccaGGugGCG-CCGG-GCGg -3'
miRNA:   3'- cAGUGGCa-CG---UCugCGCuGGCCgCGC- -5'
10820 5' -60.4 NC_002794.1 + 92260 0.66 0.791797
Target:  5'- cGUCGCUGgcgGCGG-CGCcgGGCgaGGCGCGc -3'
miRNA:   3'- -CAGUGGCa--CGUCuGCG--CUGg-CCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 112244 0.66 0.791797
Target:  5'- -cCGCCGcgaacgccGCcGGCGgGACCGGCGUc -3'
miRNA:   3'- caGUGGCa-------CGuCUGCgCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 116868 0.66 0.783103
Target:  5'- --gGCCGUGUcgcgcucgucagGGGgGCG-CCGGCGCc -3'
miRNA:   3'- cagUGGCACG------------UCUgCGCuGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 58864 0.66 0.783103
Target:  5'- cGUCGCCGaccgGCAGccguGCGCG-CC-GCGCa -3'
miRNA:   3'- -CAGUGGCa---CGUC----UGCGCuGGcCGCGc -5'
10820 5' -60.4 NC_002794.1 + 153345 0.66 0.783103
Target:  5'- --gACgCGUGUugucaGGACGCGGCCcGGCuGCGc -3'
miRNA:   3'- cagUG-GCACG-----UCUGCGCUGG-CCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 147206 0.66 0.783103
Target:  5'- cUUGCCGU-CGGGcCGgGGCCGGgGCGu -3'
miRNA:   3'- cAGUGGCAcGUCU-GCgCUGGCCgCGC- -5'
10820 5' -60.4 NC_002794.1 + 44424 0.66 0.783103
Target:  5'- -gCGCCGaGCGGcuCGaCGAcaCCGGCGCGc -3'
miRNA:   3'- caGUGGCaCGUCu-GC-GCU--GGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 72436 0.66 0.783103
Target:  5'- --aGCCG-GCGGAgG-GACCGGCgGCGc -3'
miRNA:   3'- cagUGGCaCGUCUgCgCUGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 60643 0.66 0.783103
Target:  5'- -gCGCCG-GCGG-CGcCGGCCacccGGCGCGc -3'
miRNA:   3'- caGUGGCaCGUCuGC-GCUGG----CCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 96725 0.66 0.783103
Target:  5'- --gGCCGaGCcGGCGaCGaccGCCGGCGCGu -3'
miRNA:   3'- cagUGGCaCGuCUGC-GC---UGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 191659 0.66 0.783103
Target:  5'- -cCGCCG-GgGGACgGCG-CCGGCaGCGg -3'
miRNA:   3'- caGUGGCaCgUCUG-CGCuGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 121969 0.66 0.780471
Target:  5'- -gCuCCGUGCGGcucggucccgccgaGCGCGGCCGGgaGCu -3'
miRNA:   3'- caGuGGCACGUC--------------UGCGCUGGCCg-CGc -5'
10820 5' -60.4 NC_002794.1 + 186862 0.66 0.777827
Target:  5'- --uGCCGUGCAGcAgcagcgggcucggcuCGCGGuCCGGCGUc -3'
miRNA:   3'- cagUGGCACGUC-U---------------GCGCU-GGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 38423 0.66 0.774287
Target:  5'- cUCGCCGacuccauggcgGCGGGC-CGgacugaggaGCCGGCGCGg -3'
miRNA:   3'- cAGUGGCa----------CGUCUGcGC---------UGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 141686 0.66 0.774287
Target:  5'- gGUCGCCGUacGCGGucccguCGUGgccgaACCGGCGUu -3'
miRNA:   3'- -CAGUGGCA--CGUCu-----GCGC-----UGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 153671 0.66 0.774287
Target:  5'- -cCGCCGguugugagGCucgacGCGCGACCGGCGa- -3'
miRNA:   3'- caGUGGCa-------CGuc---UGCGCUGGCCGCgc -5'
10820 5' -60.4 NC_002794.1 + 145060 0.67 0.765355
Target:  5'- uUCACCGaGCuggcGGCGgGGCCGGacaGCa -3'
miRNA:   3'- cAGUGGCaCGu---CUGCgCUGGCCg--CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.