miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 5' -60.4 NC_002794.1 + 145060 0.67 0.765355
Target:  5'- uUCACCGaGCuggcGGCGgGGCCGGacaGCa -3'
miRNA:   3'- cAGUGGCaCGu---CUGCgCUGGCCg--CGc -5'
10820 5' -60.4 NC_002794.1 + 59303 0.67 0.765355
Target:  5'- -aCGCCGcGCAG-CGCca-CGGCGCGc -3'
miRNA:   3'- caGUGGCaCGUCuGCGcugGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 14768 0.67 0.765355
Target:  5'- cGUCgagGCCGcugagGCcGGCGaGGCCGGCGUGa -3'
miRNA:   3'- -CAG---UGGCa----CGuCUGCgCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 145370 0.67 0.756318
Target:  5'- gGUCACCGgGCggAGACGCuccGCUcgguGGCGCGc -3'
miRNA:   3'- -CAGUGGCaCG--UCUGCGc--UGG----CCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 50578 0.67 0.756318
Target:  5'- -aCGgCGUGCGcGGCggcuggGUGGCCGGCGCc -3'
miRNA:   3'- caGUgGCACGU-CUG------CGCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 101522 0.67 0.756318
Target:  5'- -aCGCCG-GCGGG-GUGcCCGGCGCc -3'
miRNA:   3'- caGUGGCaCGUCUgCGCuGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 181522 0.67 0.756318
Target:  5'- cGUCGuCCGUucgcccgccGCcGGCG-GGCCGGCGCu -3'
miRNA:   3'- -CAGU-GGCA---------CGuCUGCgCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 119507 0.67 0.756318
Target:  5'- gGUCGUCG-GCGG-CGCGgaGCCGGcCGCGg -3'
miRNA:   3'- -CAGUGGCaCGUCuGCGC--UGGCC-GCGC- -5'
10820 5' -60.4 NC_002794.1 + 138575 0.67 0.756318
Target:  5'- cGUCGCuCGaucgAGGCGCG-UCGGCGCGg -3'
miRNA:   3'- -CAGUG-GCacg-UCUGCGCuGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 43895 0.67 0.756318
Target:  5'- cGUCGCCG-GCGucuCGUGAggagCGGCGCGg -3'
miRNA:   3'- -CAGUGGCaCGUcu-GCGCUg---GCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 112321 0.67 0.747181
Target:  5'- -gCGCCGacgGCGGggagcGCGcCGGCCGGCgGCGc -3'
miRNA:   3'- caGUGGCa--CGUC-----UGC-GCUGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 112503 0.67 0.747181
Target:  5'- -gUACCGcgaGCGGuCGCGguGCUGGCGCa -3'
miRNA:   3'- caGUGGCa--CGUCuGCGC--UGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 66031 0.67 0.747181
Target:  5'- cGUCGCCGUcGUcGuCG-GGCCGGCaGCGg -3'
miRNA:   3'- -CAGUGGCA-CGuCuGCgCUGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 94031 0.67 0.747181
Target:  5'- -cCGCCG-GCGGGCccgagaGCGGCggCGGUGCGg -3'
miRNA:   3'- caGUGGCaCGUCUG------CGCUG--GCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 101566 0.67 0.747181
Target:  5'- -aCGCCG-GCGGGagugccggccgcCGCGGCCGGgGgGg -3'
miRNA:   3'- caGUGGCaCGUCU------------GCGCUGGCCgCgC- -5'
10820 5' -60.4 NC_002794.1 + 120097 0.67 0.737954
Target:  5'- --gACCGUGCcGAgCGCG-CCGcGCGUGa -3'
miRNA:   3'- cagUGGCACGuCU-GCGCuGGC-CGCGC- -5'
10820 5' -60.4 NC_002794.1 + 148123 0.67 0.737954
Target:  5'- gGUCGgUGU-CGGGCGCGgggccGCCGGgGCGa -3'
miRNA:   3'- -CAGUgGCAcGUCUGCGC-----UGGCCgCGC- -5'
10820 5' -60.4 NC_002794.1 + 191299 0.67 0.737954
Target:  5'- -cCACCGagacaCGGAUGCGagggGCCGGCGUGc -3'
miRNA:   3'- caGUGGCac---GUCUGCGC----UGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 188400 0.67 0.737954
Target:  5'- cUCGCC--GCAGACGgGACCGcCGCc -3'
miRNA:   3'- cAGUGGcaCGUCUGCgCUGGCcGCGc -5'
10820 5' -60.4 NC_002794.1 + 75576 0.67 0.737954
Target:  5'- uUCuCCGcGCAGugGCuGCCGGcCGCc -3'
miRNA:   3'- cAGuGGCaCGUCugCGcUGGCC-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.