miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 5' -60.4 NC_002794.1 + 262 0.72 0.463414
Target:  5'- -cCGCCGcgcgcGCGGACGCGAggacggcggccCUGGCGCGc -3'
miRNA:   3'- caGUGGCa----CGUCUGCGCU-----------GGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 8113 0.71 0.535592
Target:  5'- -cCACCGaGCGGGCggcggccuccucgGUGACCGGCGaCGg -3'
miRNA:   3'- caGUGGCaCGUCUG-------------CGCUGGCCGC-GC- -5'
10820 5' -60.4 NC_002794.1 + 12175 0.69 0.63268
Target:  5'- cGUCGCCGccgacGCcGcCGCGGCCGgGCGCc -3'
miRNA:   3'- -CAGUGGCa----CGuCuGCGCUGGC-CGCGc -5'
10820 5' -60.4 NC_002794.1 + 13048 0.7 0.583259
Target:  5'- cGUCugCGgaaccccacuauuUGagggGGccGCGCGACCGGCGCGa -3'
miRNA:   3'- -CAGugGC-------------ACg---UC--UGCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 13722 0.68 0.709804
Target:  5'- cUCgACCGUGCGGACccacacgcuccCGGCCGGC-CGa -3'
miRNA:   3'- cAG-UGGCACGUCUGc----------GCUGGCCGcGC- -5'
10820 5' -60.4 NC_002794.1 + 14768 0.67 0.765355
Target:  5'- cGUCgagGCCGcugagGCcGGCGaGGCCGGCGUGa -3'
miRNA:   3'- -CAG---UGGCa----CGuCUGCgCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 18805 0.68 0.700291
Target:  5'- -cCGCCGgccaacggGUcGGCGaccuCGGCCGGCGCGg -3'
miRNA:   3'- caGUGGCa-------CGuCUGC----GCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 18860 0.68 0.700291
Target:  5'- cGUCGCCGaucGCcaACGCcaccgacGCCGGCGCGg -3'
miRNA:   3'- -CAGUGGCa--CGucUGCGc------UGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 19495 0.7 0.584222
Target:  5'- -gCACCGacgacgGCGGAgguCGCGccgcucggagcGCCGGCGCGg -3'
miRNA:   3'- caGUGGCa-----CGUCU---GCGC-----------UGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 20390 0.7 0.584222
Target:  5'- -aCGCgGUGCGG-CGgGACCGGgaGCGg -3'
miRNA:   3'- caGUGgCACGUCuGCgCUGGCCg-CGC- -5'
10820 5' -60.4 NC_002794.1 + 21996 0.66 0.800362
Target:  5'- cGUCGCCG-GCAaGC-CGGCCaaGGCGUGc -3'
miRNA:   3'- -CAGUGGCaCGUcUGcGCUGG--CCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 22941 0.67 0.719257
Target:  5'- -cCAUCGgcugGCcGACG-GGCCGGCGCc -3'
miRNA:   3'- caGUGGCa---CGuCUGCgCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 30724 0.66 0.816251
Target:  5'- aUCAUCGgacuccGCccgaacuGGcCGCGGCUGGCGCGc -3'
miRNA:   3'- cAGUGGCa-----CG-------UCuGCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 32301 0.71 0.508566
Target:  5'- -cCGCCGcgGCGGcCGCG-CCGGcCGCGg -3'
miRNA:   3'- caGUGGCa-CGUCuGCGCuGGCC-GCGC- -5'
10820 5' -60.4 NC_002794.1 + 32628 0.69 0.652106
Target:  5'- -cCGCCGacgaagagGgGGGCGaCGACCGGgGCGa -3'
miRNA:   3'- caGUGGCa-------CgUCUGC-GCUGGCCgCGC- -5'
10820 5' -60.4 NC_002794.1 + 32868 0.66 0.808789
Target:  5'- --aGCCG-GCGGGCgGCGGCggCGGCgGCGg -3'
miRNA:   3'- cagUGGCaCGUCUG-CGCUG--GCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 34255 0.69 0.63268
Target:  5'- --uGCCGccGCAGGCG-GACCGcGCGCa -3'
miRNA:   3'- cagUGGCa-CGUCUGCgCUGGC-CGCGc -5'
10820 5' -60.4 NC_002794.1 + 34697 0.69 0.63268
Target:  5'- cGUCACCcgccaGCAGGCcCG-CCGGCGCc -3'
miRNA:   3'- -CAGUGGca---CGUCUGcGCuGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 35775 0.69 0.622963
Target:  5'- -gCACCGUcGCcGGCGuCGucuCCGGCGUGa -3'
miRNA:   3'- caGUGGCA-CGuCUGC-GCu--GGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 37263 0.73 0.412149
Target:  5'- cUCuCCGUcgGCGGGCGCG-CgGGCGCGg -3'
miRNA:   3'- cAGuGGCA--CGUCUGCGCuGgCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.