miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 5' -60.4 NC_002794.1 + 37744 0.69 0.613253
Target:  5'- -cCGCCGgcgGCGG-CGCGgcggcGCCGGCGgGa -3'
miRNA:   3'- caGUGGCa--CGUCuGCGC-----UGGCCGCgC- -5'
10820 5' -60.4 NC_002794.1 + 38088 0.74 0.372208
Target:  5'- -aCACgGU-CAG-CGCGACCGGCGUGa -3'
miRNA:   3'- caGUGgCAcGUCuGCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 38262 0.71 0.536533
Target:  5'- -cCugCGUG-AGGCGCGGCCcccGCGCGa -3'
miRNA:   3'- caGugGCACgUCUGCGCUGGc--CGCGC- -5'
10820 5' -60.4 NC_002794.1 + 38423 0.66 0.774287
Target:  5'- cUCGCCGacuccauggcgGCGGGC-CGgacugaggaGCCGGCGCGg -3'
miRNA:   3'- cAGUGGCa----------CGUCUGcGC---------UGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 38612 0.69 0.642397
Target:  5'- --gGCCG-GaCGGGCGCGucccgacucGCCGGUGCGg -3'
miRNA:   3'- cagUGGCaC-GUCUGCGC---------UGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 40332 0.77 0.234578
Target:  5'- -cCGCCGcGCGGACGCGccACCGGCgGCGc -3'
miRNA:   3'- caGUGGCaCGUCUGCGC--UGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 43895 0.67 0.756318
Target:  5'- cGUCGCCG-GCGucuCGUGAggagCGGCGCGg -3'
miRNA:   3'- -CAGUGGCaCGUcu-GCGCUg---GCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 43992 0.7 0.593876
Target:  5'- --aGCCGgacgugugggaGCAcGGCGCGGCCGGCGUc -3'
miRNA:   3'- cagUGGCa----------CGU-CUGCGCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 44160 0.69 0.622963
Target:  5'- --uGCaCGUGCAcGGCGCGAgCGGCGg- -3'
miRNA:   3'- cagUG-GCACGU-CUGCGCUgGCCGCgc -5'
10820 5' -60.4 NC_002794.1 + 44302 0.67 0.728643
Target:  5'- --gGCCGgcgagGCGGGgaGCGACCGcgaGCGCGg -3'
miRNA:   3'- cagUGGCa----CGUCUg-CGCUGGC---CGCGC- -5'
10820 5' -60.4 NC_002794.1 + 44349 0.69 0.621992
Target:  5'- -gCGCCG-GCgAGaccgagaGCGCGGCgGGCGCGa -3'
miRNA:   3'- caGUGGCaCG-UC-------UGCGCUGgCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 44424 0.66 0.783103
Target:  5'- -gCGCCGaGCGGcuCGaCGAcaCCGGCGCGc -3'
miRNA:   3'- caGUGGCaCGUCu-GC-GCU--GGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 44716 0.7 0.555471
Target:  5'- --gACCGcgGC-GACGuCGGCCGGCGCc -3'
miRNA:   3'- cagUGGCa-CGuCUGC-GCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 44764 0.69 0.603555
Target:  5'- cGUCGCCGUcccgacGCAGcgccucCGUGAUCGGCGUc -3'
miRNA:   3'- -CAGUGGCA------CGUCu-----GCGCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 44996 0.69 0.621992
Target:  5'- uUgGCCGUGCGGAccuguugcagacuCGUGGCCgGGUGCu -3'
miRNA:   3'- cAgUGGCACGUCU-------------GCGCUGG-CCGCGc -5'
10820 5' -60.4 NC_002794.1 + 49015 0.73 0.40395
Target:  5'- -gCGCCGcgGCGGcCGCGGcgucguCCGGCGCGg -3'
miRNA:   3'- caGUGGCa-CGUCuGCGCU------GGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 49454 0.72 0.454634
Target:  5'- cGUCGCCGUgGCGccGcCGUGACCGGCcgccGCGg -3'
miRNA:   3'- -CAGUGGCA-CGU--CuGCGCUGGCCG----CGC- -5'
10820 5' -60.4 NC_002794.1 + 50578 0.67 0.756318
Target:  5'- -aCGgCGUGCGcGGCggcuggGUGGCCGGCGCc -3'
miRNA:   3'- caGUgGCACGU-CUG------CGCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 51208 0.67 0.719257
Target:  5'- cUCGCCc-GCGGA-GCGGCCGGC-CGg -3'
miRNA:   3'- cAGUGGcaCGUCUgCGCUGGCCGcGC- -5'
10820 5' -60.4 NC_002794.1 + 51270 0.69 0.63268
Target:  5'- --gGCCGggagGCAGGCGCGGCCcGCcCGa -3'
miRNA:   3'- cagUGGCa---CGUCUGCGCUGGcCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.