miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10820 5' -60.4 NC_002794.1 + 192970 0.71 0.516895
Target:  5'- --aGCCGUGCAGgaccaggGCGCGGucgcccucgcCCGGCGUGu -3'
miRNA:   3'- cagUGGCACGUC-------UGCGCU----------GGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 192420 0.76 0.287571
Target:  5'- -aCGCCGcGaCGGGucCGCGGCCGGCGCGu -3'
miRNA:   3'- caGUGGCaC-GUCU--GCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 191659 0.66 0.783103
Target:  5'- -cCGCCG-GgGGACgGCG-CCGGCaGCGg -3'
miRNA:   3'- caGUGGCaCgUCUG-CGCuGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 191299 0.67 0.737954
Target:  5'- -cCACCGagacaCGGAUGCGagggGCCGGCGUGc -3'
miRNA:   3'- caGUGGCac---GUCUGCGC----UGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 188400 0.67 0.737954
Target:  5'- cUCGCC--GCAGACGgGACCGcCGCc -3'
miRNA:   3'- cAGUGGcaCGUCUGCgCUGGCcGCGc -5'
10820 5' -60.4 NC_002794.1 + 188331 0.67 0.716428
Target:  5'- cGUCGCCGccgccgGCGG-CGCcgucgcgcccguccGGCCGGCgGCGg -3'
miRNA:   3'- -CAGUGGCa-----CGUCuGCG--------------CUGGCCG-CGC- -5'
10820 5' -60.4 NC_002794.1 + 187942 0.68 0.690727
Target:  5'- cGUCACgCGUGCGcGCGCGA---GCGCGg -3'
miRNA:   3'- -CAGUG-GCACGUcUGCGCUggcCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 186862 0.66 0.777827
Target:  5'- --uGCCGUGCAGcAgcagcgggcucggcuCGCGGuCCGGCGUc -3'
miRNA:   3'- cagUGGCACGUC-U---------------GCGCU-GGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 186386 0.69 0.642397
Target:  5'- cGUCGCCGcagccGCAGcCGCGGCCgcaccagucGGCGuCGa -3'
miRNA:   3'- -CAGUGGCa----CGUCuGCGCUGG---------CCGC-GC- -5'
10820 5' -60.4 NC_002794.1 + 185762 0.72 0.454634
Target:  5'- -cCGCCGgcGCGGccgcccgucacACGuCGGCCGGCGCGg -3'
miRNA:   3'- caGUGGCa-CGUC-----------UGC-GCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 185259 0.67 0.765355
Target:  5'- -gCGCCa-GCGGACGCcGCCGGC-CGa -3'
miRNA:   3'- caGUGGcaCGUCUGCGcUGGCCGcGC- -5'
10820 5' -60.4 NC_002794.1 + 185171 0.76 0.281245
Target:  5'- -cCGCCG-GCGcGGCGCGGUCGGCGCGg -3'
miRNA:   3'- caGUGGCaCGU-CUGCGCUGGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 185081 0.75 0.327874
Target:  5'- cGUCGCCGUaGCAGGCGUaccaGCCGGuCGUGu -3'
miRNA:   3'- -CAGUGGCA-CGUCUGCGc---UGGCC-GCGC- -5'
10820 5' -60.4 NC_002794.1 + 184460 0.66 0.791797
Target:  5'- --uGCCGcccGCGGgccGCGCGAaCGGCGCGc -3'
miRNA:   3'- cagUGGCa--CGUC---UGCGCUgGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 183590 0.69 0.617136
Target:  5'- -aUACgGUGgGGgcggaggggggccgcGCGCGGCCGGCGCc -3'
miRNA:   3'- caGUGgCACgUC---------------UGCGCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 183283 0.67 0.728643
Target:  5'- -cCACCGcGCGGAuCGgGcCCGGCGUc -3'
miRNA:   3'- caGUGGCaCGUCU-GCgCuGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 182578 0.68 0.700291
Target:  5'- aUCuCCGUGCGGGCGaCGAU-GGuCGCGu -3'
miRNA:   3'- cAGuGGCACGUCUGC-GCUGgCC-GCGC- -5'
10820 5' -60.4 NC_002794.1 + 181522 0.67 0.756318
Target:  5'- cGUCGuCCGUucgcccgccGCcGGCG-GGCCGGCGCu -3'
miRNA:   3'- -CAGU-GGCA---------CGuCUGCgCUGGCCGCGc -5'
10820 5' -60.4 NC_002794.1 + 180845 0.7 0.549768
Target:  5'- cGUCACCGUcGUcuacggccucgucggAGGCgGCGGauCCGGCGCGc -3'
miRNA:   3'- -CAGUGGCA-CG---------------UCUG-CGCU--GGCCGCGC- -5'
10820 5' -60.4 NC_002794.1 + 180353 0.79 0.181201
Target:  5'- aUCGCCacGCAGAgGaCGACCGGCGCGa -3'
miRNA:   3'- cAGUGGcaCGUCUgC-GCUGGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.