miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10822 3' -55.4 NC_002794.1 + 120851 0.66 0.967718
Target:  5'- ---cCUGCGcGGCCGucguCCAGCGcCUCGg -3'
miRNA:   3'- agcaGACGCaCUGGC----GGUUGCaGAGC- -5'
10822 3' -55.4 NC_002794.1 + 35450 0.66 0.967718
Target:  5'- cUGcCUGCGgcUGAUCGCCAGCuGcCUCu -3'
miRNA:   3'- aGCaGACGC--ACUGGCGGUUG-CaGAGc -5'
10822 3' -55.4 NC_002794.1 + 100908 0.66 0.967718
Target:  5'- -gGUCUGC---AUgGCCAAgGUCUCGg -3'
miRNA:   3'- agCAGACGcacUGgCGGUUgCAGAGC- -5'
10822 3' -55.4 NC_002794.1 + 31951 0.66 0.967718
Target:  5'- cUUGuUCUGCGUcuGGuuGUCGuacgACGUCUCGa -3'
miRNA:   3'- -AGC-AGACGCA--CUggCGGU----UGCAGAGC- -5'
10822 3' -55.4 NC_002794.1 + 142979 0.66 0.961292
Target:  5'- gUCGaggggCUGCGUGcCCGCCGugGcCa-- -3'
miRNA:   3'- -AGCa----GACGCACuGGCGGUugCaGagc -5'
10822 3' -55.4 NC_002794.1 + 128834 0.66 0.961292
Target:  5'- cUGUCUGauccUGAgCGCCGGCGUCg-- -3'
miRNA:   3'- aGCAGACgc--ACUgGCGGUUGCAGagc -5'
10822 3' -55.4 NC_002794.1 + 194009 0.66 0.961292
Target:  5'- uUCGcCUucGCGgccgccGCCGCCGGCGcCUCGc -3'
miRNA:   3'- -AGCaGA--CGCac----UGGCGGUUGCaGAGC- -5'
10822 3' -55.4 NC_002794.1 + 123117 0.66 0.961292
Target:  5'- aCGUgUGCGUcGAgCGCC-ACGUCcccgUCGu -3'
miRNA:   3'- aGCAgACGCA-CUgGCGGuUGCAG----AGC- -5'
10822 3' -55.4 NC_002794.1 + 154397 0.66 0.957769
Target:  5'- cCGUUcGCGUGguGCCggugGCCAGCG-CUCGc -3'
miRNA:   3'- aGCAGaCGCAC--UGG----CGGUUGCaGAGC- -5'
10822 3' -55.4 NC_002794.1 + 178191 0.66 0.954032
Target:  5'- -aGUCUGCGgccggcUGACUGCCcuCGguagcCUCGg -3'
miRNA:   3'- agCAGACGC------ACUGGCGGuuGCa----GAGC- -5'
10822 3' -55.4 NC_002794.1 + 47423 0.66 0.954032
Target:  5'- cCGUC-GCGcgGAgCGCCAGgCGUUUCa -3'
miRNA:   3'- aGCAGaCGCa-CUgGCGGUU-GCAGAGc -5'
10822 3' -55.4 NC_002794.1 + 89959 0.66 0.950077
Target:  5'- aCGUCgagGCGUucggaccgugGugCGCCGGCGU-UCGa -3'
miRNA:   3'- aGCAGa--CGCA----------CugGCGGUUGCAgAGC- -5'
10822 3' -55.4 NC_002794.1 + 118058 0.66 0.950077
Target:  5'- cCGUCUcGCGgaaGACgGCCGACGacaUCUgGa -3'
miRNA:   3'- aGCAGA-CGCa--CUGgCGGUUGC---AGAgC- -5'
10822 3' -55.4 NC_002794.1 + 67402 0.67 0.945903
Target:  5'- gCGUCggcgccaGCGUcGgCGCCAGCGUCggCGg -3'
miRNA:   3'- aGCAGa------CGCAcUgGCGGUUGCAGa-GC- -5'
10822 3' -55.4 NC_002794.1 + 79288 0.67 0.945903
Target:  5'- gCGUCuuuuccUGCGUGGCCGa--GCGcCUCGa -3'
miRNA:   3'- aGCAG------ACGCACUGGCgguUGCaGAGC- -5'
10822 3' -55.4 NC_002794.1 + 35104 0.67 0.932032
Target:  5'- aCGUCaGCGUGACCGagAACcggGUCUgGg -3'
miRNA:   3'- aGCAGaCGCACUGGCggUUG---CAGAgC- -5'
10822 3' -55.4 NC_002794.1 + 34098 0.67 0.932032
Target:  5'- cCGUCggGCGgcccgGACCGC-GACGUCcgCGa -3'
miRNA:   3'- aGCAGa-CGCa----CUGGCGgUUGCAGa-GC- -5'
10822 3' -55.4 NC_002794.1 + 71399 0.68 0.92165
Target:  5'- -gGUCUGCGgcucgGGCCGgccgucguCCAGCGUggaCUCGu -3'
miRNA:   3'- agCAGACGCa----CUGGC--------GGUUGCA---GAGC- -5'
10822 3' -55.4 NC_002794.1 + 189128 0.68 0.916117
Target:  5'- -gGUCcaagUGCGgGGCCGCCAGCGccagacUCUCc -3'
miRNA:   3'- agCAG----ACGCaCUGGCGGUUGC------AGAGc -5'
10822 3' -55.4 NC_002794.1 + 124466 0.68 0.904373
Target:  5'- gUCGUCgGCGUcGCCGCCGcACGcC-CGg -3'
miRNA:   3'- -AGCAGaCGCAcUGGCGGU-UGCaGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.