miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10822 5' -60.1 NC_002794.1 + 42223 0.66 0.850631
Target:  5'- cCGCuggaucaGCCGCGa-GACGGCGgcGACGAa -3'
miRNA:   3'- -GCGc------CGGCGCcgCUGCUGCuaCUGCU- -5'
10822 5' -60.1 NC_002794.1 + 128071 0.66 0.850631
Target:  5'- cCGUgagGGCCGaauggcccgaguCGGCGACGGgGAgcucGACGGg -3'
miRNA:   3'- -GCG---CCGGC------------GCCGCUGCUgCUa---CUGCU- -5'
10822 5' -60.1 NC_002794.1 + 94397 0.66 0.850631
Target:  5'- uCGCGcG-UGCGGgGACcGCGGUGugGGg -3'
miRNA:   3'- -GCGC-CgGCGCCgCUGcUGCUACugCU- -5'
10822 5' -60.1 NC_002794.1 + 71316 0.66 0.850631
Target:  5'- gGCGGCgagCGCGccaccuCGGCGGCGAUGuCGu -3'
miRNA:   3'- gCGCCG---GCGCc-----GCUGCUGCUACuGCu -5'
10822 5' -60.1 NC_002794.1 + 54486 0.66 0.850631
Target:  5'- gGCGGUgGCGGCuuuGAaccaacCGACGuUGACGu -3'
miRNA:   3'- gCGCCGgCGCCG---CU------GCUGCuACUGCu -5'
10822 5' -60.1 NC_002794.1 + 271 0.66 0.850631
Target:  5'- gCGCGGaCGCGaG-GACGGCGGcccUGGCGc -3'
miRNA:   3'- -GCGCCgGCGC-CgCUGCUGCU---ACUGCu -5'
10822 5' -60.1 NC_002794.1 + 51368 0.66 0.850631
Target:  5'- gGCGGCCGCcccguccggccGGCGACaGGCGcccuccgGGCu- -3'
miRNA:   3'- gCGCCGGCG-----------CCGCUG-CUGCua-----CUGcu -5'
10822 5' -60.1 NC_002794.1 + 84285 0.66 0.849886
Target:  5'- aGCuGCCGaCGGgGAgCGGCGGcgcuuccUGGCGAc -3'
miRNA:   3'- gCGcCGGC-GCCgCU-GCUGCU-------ACUGCU- -5'
10822 5' -60.1 NC_002794.1 + 116364 0.66 0.843108
Target:  5'- gCGCGGuCCGaccgguCGGUGGCGugcggguCGAaGACGAa -3'
miRNA:   3'- -GCGCC-GGC------GCCGCUGCu------GCUaCUGCU- -5'
10822 5' -60.1 NC_002794.1 + 26184 0.66 0.835415
Target:  5'- gCGCGGgaGCGGUGACGAUuuuUGAUc- -3'
miRNA:   3'- -GCGCCggCGCCGCUGCUGcu-ACUGcu -5'
10822 5' -60.1 NC_002794.1 + 153543 0.66 0.835415
Target:  5'- gGCGGCUGgaugccccaCGGCGAauauaCGAuCGAgGACGAa -3'
miRNA:   3'- gCGCCGGC---------GCCGCU-----GCU-GCUaCUGCU- -5'
10822 5' -60.1 NC_002794.1 + 141457 0.66 0.835415
Target:  5'- aGCGG-CGCGGCGucCGGac-UGGCGAg -3'
miRNA:   3'- gCGCCgGCGCCGCu-GCUgcuACUGCU- -5'
10822 5' -60.1 NC_002794.1 + 70091 0.66 0.835415
Target:  5'- aCGCaGGCCGCGcagaagaagaaGcCGACGAUcacggaGGUGAUGAa -3'
miRNA:   3'- -GCG-CCGGCGC-----------C-GCUGCUG------CUACUGCU- -5'
10822 5' -60.1 NC_002794.1 + 77996 0.66 0.835415
Target:  5'- gGCGGgCGUuguuccGGCGGCGGCGccGuCGGg -3'
miRNA:   3'- gCGCCgGCG------CCGCUGCUGCuaCuGCU- -5'
10822 5' -60.1 NC_002794.1 + 80569 0.66 0.835415
Target:  5'- cCGC-GCCGUGcCGACGcACGGgcUGACGGa -3'
miRNA:   3'- -GCGcCGGCGCcGCUGC-UGCU--ACUGCU- -5'
10822 5' -60.1 NC_002794.1 + 82117 0.66 0.835415
Target:  5'- cCGCaGCCuccuCGGCGugGGCGucacgugGGCGGa -3'
miRNA:   3'- -GCGcCGGc---GCCGCugCUGCua-----CUGCU- -5'
10822 5' -60.1 NC_002794.1 + 128162 0.66 0.835415
Target:  5'- gGCGGCuCGCGccGCgGACGGguCGGUGACc- -3'
miRNA:   3'- gCGCCG-GCGC--CG-CUGCU--GCUACUGcu -5'
10822 5' -60.1 NC_002794.1 + 148465 0.66 0.835415
Target:  5'- cCGCGGCaCGgGGUGuuGAuCGggGACGc -3'
miRNA:   3'- -GCGCCG-GCgCCGCugCU-GCuaCUGCu -5'
10822 5' -60.1 NC_002794.1 + 180306 0.66 0.835415
Target:  5'- aCGcCGGCCG-GcGCGACcaGACGAUGAa-- -3'
miRNA:   3'- -GC-GCCGGCgC-CGCUG--CUGCUACUgcu -5'
10822 5' -60.1 NC_002794.1 + 11923 0.66 0.835415
Target:  5'- aCGaCGGCCaCGGUGAUcGCGAUcGCGGu -3'
miRNA:   3'- -GC-GCCGGcGCCGCUGcUGCUAcUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.