miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10823 3' -56.7 NC_002794.1 + 39537 0.66 0.921641
Target:  5'- cACCuGgggcuGCugUGCGGCCuCUGCGg- -3'
miRNA:   3'- -UGG-Cauu--CGugAUGCCGGcGACGCac -5'
10823 3' -56.7 NC_002794.1 + 147409 0.66 0.921094
Target:  5'- cGCCacGAGCGCUACGcguacccGCUGCUGC-UGg -3'
miRNA:   3'- -UGGcaUUCGUGAUGC-------CGGCGACGcAC- -5'
10823 3' -56.7 NC_002794.1 + 61516 0.66 0.91606
Target:  5'- cGCCGgacGGCggccGCcgGCGGCCGCcGCGa- -3'
miRNA:   3'- -UGGCau-UCG----UGa-UGCCGGCGaCGCac -5'
10823 3' -56.7 NC_002794.1 + 115314 0.66 0.91606
Target:  5'- cGCCGUccGCACggucGCCGCgGCGUc -3'
miRNA:   3'- -UGGCAuuCGUGaugcCGGCGaCGCAc -5'
10823 3' -56.7 NC_002794.1 + 150537 0.66 0.91606
Target:  5'- aGCCGggccGGCGCcAUGGCCGUcucgGCGcUGg -3'
miRNA:   3'- -UGGCau--UCGUGaUGCCGGCGa---CGC-AC- -5'
10823 3' -56.7 NC_002794.1 + 150243 0.66 0.91606
Target:  5'- aGCUGgAAGCGCUGCGGCuCGUgccGCu-- -3'
miRNA:   3'- -UGGCaUUCGUGAUGCCG-GCGa--CGcac -5'
10823 3' -56.7 NC_002794.1 + 112344 0.66 0.910249
Target:  5'- gGCCGgcGGCGC--CGGCgGCgggGCGg- -3'
miRNA:   3'- -UGGCauUCGUGauGCCGgCGa--CGCac -5'
10823 3' -56.7 NC_002794.1 + 69732 0.66 0.910249
Target:  5'- uGCCGccgGAGCGCcACGGCCgGCgacgccGCGg- -3'
miRNA:   3'- -UGGCa--UUCGUGaUGCCGG-CGa-----CGCac -5'
10823 3' -56.7 NC_002794.1 + 95738 0.66 0.910249
Target:  5'- gACCGUuggacggggcuGGUACUcgcggggcgGCGGCCGCgacgGCGg- -3'
miRNA:   3'- -UGGCAu----------UCGUGA---------UGCCGGCGa---CGCac -5'
10823 3' -56.7 NC_002794.1 + 11006 0.66 0.904208
Target:  5'- gACCGUGucccGCACcGCGGCCGUcacgGCu-- -3'
miRNA:   3'- -UGGCAUu---CGUGaUGCCGGCGa---CGcac -5'
10823 3' -56.7 NC_002794.1 + 48997 0.66 0.89794
Target:  5'- cCCGUucgAAGCuCUcccgcgccgcgGCGGCCGCgGCGUc -3'
miRNA:   3'- uGGCA---UUCGuGA-----------UGCCGGCGaCGCAc -5'
10823 3' -56.7 NC_002794.1 + 59341 0.66 0.89794
Target:  5'- cGCCaccacGCGCUcuacaACGGCUGCUGCGc- -3'
miRNA:   3'- -UGGcauu-CGUGA-----UGCCGGCGACGCac -5'
10823 3' -56.7 NC_002794.1 + 38444 0.66 0.89794
Target:  5'- gGCCGgacugagGAGC-CggcGCGGCCGCgGCGc- -3'
miRNA:   3'- -UGGCa------UUCGuGa--UGCCGGCGaCGCac -5'
10823 3' -56.7 NC_002794.1 + 126378 0.66 0.89794
Target:  5'- -gCGUGGGCGCcGgGGCCuGCgcggcgGCGUGc -3'
miRNA:   3'- ugGCAUUCGUGaUgCCGG-CGa-----CGCAC- -5'
10823 3' -56.7 NC_002794.1 + 52842 0.67 0.891449
Target:  5'- gGCCGgucAGCACguucgccACGGCCGCgGCc-- -3'
miRNA:   3'- -UGGCau-UCGUGa------UGCCGGCGaCGcac -5'
10823 3' -56.7 NC_002794.1 + 129932 0.67 0.891449
Target:  5'- gGCCGU-GGCGacgGCGGCgGCgGCGg- -3'
miRNA:   3'- -UGGCAuUCGUga-UGCCGgCGaCGCac -5'
10823 3' -56.7 NC_002794.1 + 37745 0.67 0.891449
Target:  5'- cGCCGgcGGCGgcGCGGCgGCgccgGCGg- -3'
miRNA:   3'- -UGGCauUCGUgaUGCCGgCGa---CGCac -5'
10823 3' -56.7 NC_002794.1 + 141543 0.67 0.888791
Target:  5'- cGCCGaAGGCGCgaauccgccacccGCGGCCGCggccucCGUGa -3'
miRNA:   3'- -UGGCaUUCGUGa------------UGCCGGCGac----GCAC- -5'
10823 3' -56.7 NC_002794.1 + 101567 0.67 0.884737
Target:  5'- cGCCGgcggGAGUGC--CGGCCGCcGCGg- -3'
miRNA:   3'- -UGGCa---UUCGUGauGCCGGCGaCGCac -5'
10823 3' -56.7 NC_002794.1 + 13261 0.67 0.884737
Target:  5'- cGCCG--GGCugUgguggaGCGGCCGCUGUu-- -3'
miRNA:   3'- -UGGCauUCGugA------UGCCGGCGACGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.