miRNA display CGI


Results 1 - 20 of 408 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10823 5' -60.3 NC_002794.1 + 118779 0.66 0.825203
Target:  5'- aCGCGCuCCGucAGGcuCCGCagcguCGCCCGCUUg- -3'
miRNA:   3'- -GCGCG-GGU--UCU--GGUG-----GCGGGCGAAgg -5'
10823 5' -60.3 NC_002794.1 + 102163 0.66 0.825203
Target:  5'- uGCGCgCCGGGGCCAUCgugGCgCGCggCg -3'
miRNA:   3'- gCGCG-GGUUCUGGUGG---CGgGCGaaGg -5'
10823 5' -60.3 NC_002794.1 + 125098 0.66 0.825203
Target:  5'- aGCgaGCUCGAGuucacgGCCACCaGCCgcgucaGCUUCCa -3'
miRNA:   3'- gCG--CGGGUUC------UGGUGG-CGGg-----CGAAGG- -5'
10823 5' -60.3 NC_002794.1 + 46665 0.66 0.825203
Target:  5'- aGCGCUcgcagucgcaCAAGAUCGCCGCCCu----- -3'
miRNA:   3'- gCGCGG----------GUUCUGGUGGCGGGcgaagg -5'
10823 5' -60.3 NC_002794.1 + 73522 0.66 0.825203
Target:  5'- uCGUGCuggagauccaCCAGGACC-CCGuCCCGa-UCCu -3'
miRNA:   3'- -GCGCG----------GGUUCUGGuGGC-GGGCgaAGG- -5'
10823 5' -60.3 NC_002794.1 + 59541 0.66 0.825203
Target:  5'- gGCGCaCGAGuACCGCCagugGCaCCGCUcgCCc -3'
miRNA:   3'- gCGCGgGUUC-UGGUGG----CG-GGCGAa-GG- -5'
10823 5' -60.3 NC_002794.1 + 86890 0.66 0.825203
Target:  5'- --gGCCCGaucccggcgGGGCCGCCGaCCCGgUgacgCCc -3'
miRNA:   3'- gcgCGGGU---------UCUGGUGGC-GGGCgAa---GG- -5'
10823 5' -60.3 NC_002794.1 + 88903 0.66 0.825203
Target:  5'- gCGCGCUCGAGuGCCGguuuuuaUGCCCGCg--- -3'
miRNA:   3'- -GCGCGGGUUC-UGGUg------GCGGGCGaagg -5'
10823 5' -60.3 NC_002794.1 + 92868 0.66 0.825203
Target:  5'- aCGcCGCCUcGGGCCgGCaCGuCCUGCUcUCCa -3'
miRNA:   3'- -GC-GCGGGuUCUGG-UG-GC-GGGCGA-AGG- -5'
10823 5' -60.3 NC_002794.1 + 101691 0.66 0.825203
Target:  5'- gCGCgaGCCCGAG-CCGgCGCCCGaggacgugUUCg -3'
miRNA:   3'- -GCG--CGGGUUCuGGUgGCGGGCga------AGG- -5'
10823 5' -60.3 NC_002794.1 + 100070 0.66 0.825203
Target:  5'- -aCGCUgGAG-CUGgCGCCCGuCUUCCa -3'
miRNA:   3'- gcGCGGgUUCuGGUgGCGGGC-GAAGG- -5'
10823 5' -60.3 NC_002794.1 + 107259 0.66 0.825203
Target:  5'- --gGCCCGgcGGAgCCgcGCCGUCCGCcgCCg -3'
miRNA:   3'- gcgCGGGU--UCU-GG--UGGCGGGCGaaGG- -5'
10823 5' -60.3 NC_002794.1 + 193913 0.66 0.825203
Target:  5'- uCGUccucuCCCAcuucuucGGCCACCGCCgGCU-CCg -3'
miRNA:   3'- -GCGc----GGGUu------CUGGUGGCGGgCGAaGG- -5'
10823 5' -60.3 NC_002794.1 + 72818 0.66 0.824397
Target:  5'- cCGuCGCCCGuccgacggacggcAGACCACCcgagaUCCGCggcucUCCg -3'
miRNA:   3'- -GC-GCGGGU-------------UCUGGUGGc----GGGCGa----AGG- -5'
10823 5' -60.3 NC_002794.1 + 38828 0.66 0.824397
Target:  5'- uCGCGUCCAAcuacccgcaccucGGCUACC-CCUGCaUCUa -3'
miRNA:   3'- -GCGCGGGUU-------------CUGGUGGcGGGCGaAGG- -5'
10823 5' -60.3 NC_002794.1 + 181695 0.66 0.824397
Target:  5'- cCGCGCCUcGGcCCACacgcucggguaauCGCCCGUcUCg -3'
miRNA:   3'- -GCGCGGGuUCuGGUG-------------GCGGGCGaAGg -5'
10823 5' -60.3 NC_002794.1 + 179426 0.66 0.817892
Target:  5'- cCGgGCCCcgggcgcggaggcguGGACCACCGCCuCGg-UCg -3'
miRNA:   3'- -GCgCGGGu--------------UCUGGUGGCGG-GCgaAGg -5'
10823 5' -60.3 NC_002794.1 + 143738 0.66 0.817072
Target:  5'- -uCGCCCGccGGACgCGCCGCCgggggGCU-CCg -3'
miRNA:   3'- gcGCGGGU--UCUG-GUGGCGGg----CGAaGG- -5'
10823 5' -60.3 NC_002794.1 + 184008 0.66 0.817072
Target:  5'- nCGUGUCC---ACCAUCGCCgGCcgCCa -3'
miRNA:   3'- -GCGCGGGuucUGGUGGCGGgCGaaGG- -5'
10823 5' -60.3 NC_002794.1 + 39801 0.66 0.817072
Target:  5'- gGCGCC---GACCGuuuuUCGCCCGCaUCUc -3'
miRNA:   3'- gCGCGGguuCUGGU----GGCGGGCGaAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.