miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 3' -53.2 NC_002794.1 + 61917 0.66 0.99327
Target:  5'- --gCGACGUCGUCACccucgaGGAgaucGCGcucGCCCc -3'
miRNA:   3'- ccaGCUGCAGCAGUG------CCU----UGU---UGGGc -5'
10824 3' -53.2 NC_002794.1 + 116058 0.66 0.99327
Target:  5'- gGGgagcgCGACuGggGUCGCGGAGC-GCUCGg -3'
miRNA:   3'- -CCa----GCUG-CagCAGUGCCUUGuUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 91196 0.66 0.99327
Target:  5'- cGG-CGACGcUGuUCGCGGAcgGCGACgCGa -3'
miRNA:   3'- -CCaGCUGCaGC-AGUGCCU--UGUUGgGC- -5'
10824 3' -53.2 NC_002794.1 + 187688 0.66 0.993178
Target:  5'- gGGUCGAgcggcccguuggcCGUcucCGUCACGGGccGCAACacgCCGc -3'
miRNA:   3'- -CCAGCU-------------GCA---GCAGUGCCU--UGUUG---GGC- -5'
10824 3' -53.2 NC_002794.1 + 171119 0.66 0.992305
Target:  5'- aGGUCG-CGagGggGCGaGGACGAUCCGg -3'
miRNA:   3'- -CCAGCuGCagCagUGC-CUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 187766 0.66 0.992305
Target:  5'- cGcCGGCGcCgGUCGCcucgaccccggaGGAACGGCCCGc -3'
miRNA:   3'- cCaGCUGCaG-CAGUG------------CCUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 53594 0.66 0.992305
Target:  5'- uGUCGGCGUCGgcgUCAcCGGGccgccGCAGCgUCGg -3'
miRNA:   3'- cCAGCUGCAGC---AGU-GCCU-----UGUUG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 65294 0.66 0.991232
Target:  5'- -cUCGGCGUCGUCcuCGaGAcgACAGCaCCa -3'
miRNA:   3'- ccAGCUGCAGCAGu-GC-CU--UGUUG-GGc -5'
10824 3' -53.2 NC_002794.1 + 117387 0.66 0.991232
Target:  5'- cGGUCG-CGgCGaaGCGGGccuccaccgucGCGACCCGc -3'
miRNA:   3'- -CCAGCuGCaGCagUGCCU-----------UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 44541 0.66 0.991232
Target:  5'- cGcCGuCGUCGUCGcCGGcGGCGgcGCCCGu -3'
miRNA:   3'- cCaGCuGCAGCAGU-GCC-UUGU--UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 156027 0.66 0.991232
Target:  5'- gGGUCGcagccgucGCGUCG-CGCgacgGGGGCAGCCg- -3'
miRNA:   3'- -CCAGC--------UGCAGCaGUG----CCUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 35662 0.66 0.990044
Target:  5'- cGGUcucCGACGUgGUCAacgaggucaucCGGGAagaguGCCCGg -3'
miRNA:   3'- -CCA---GCUGCAgCAGU-----------GCCUUgu---UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 67080 0.66 0.990044
Target:  5'- -cUUGAUGUaCGUguCGGGGCcGACCCGu -3'
miRNA:   3'- ccAGCUGCA-GCAguGCCUUG-UUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 53125 0.66 0.990044
Target:  5'- -cUCG-CGUCGacCGCGGcgcuCAGCCCGg -3'
miRNA:   3'- ccAGCuGCAGCa-GUGCCuu--GUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 126609 0.66 0.990044
Target:  5'- aGGcCGGCGccgaCGUCGCGGcgugagcGCGACCgGg -3'
miRNA:   3'- -CCaGCUGCa---GCAGUGCCu------UGUUGGgC- -5'
10824 3' -53.2 NC_002794.1 + 14292 0.66 0.990044
Target:  5'- cGUCaGCGUCGaggCGCGGggUAGCUUu -3'
miRNA:   3'- cCAGcUGCAGCa--GUGCCuuGUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 136740 0.66 0.988735
Target:  5'- cGGUCGAgGuUCGUCuccccgagcugGCGGAcgcGCGccacGCCCa -3'
miRNA:   3'- -CCAGCUgC-AGCAG-----------UGCCU---UGU----UGGGc -5'
10824 3' -53.2 NC_002794.1 + 114387 0.66 0.988735
Target:  5'- aGGccUUGACGUCcuuGUgAUGGAGCAGCgCGu -3'
miRNA:   3'- -CC--AGCUGCAG---CAgUGCCUUGUUGgGC- -5'
10824 3' -53.2 NC_002794.1 + 101656 0.66 0.988735
Target:  5'- cGGgCGGCGguuagccCGUCcgaaacgccgGCGGAGCGcgaGCCCGa -3'
miRNA:   3'- -CCaGCUGCa------GCAG----------UGCCUUGU---UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 50774 0.66 0.988597
Target:  5'- cGG-CGACGgcgCGUCuCGGGcgGCGccuccucGCCCGg -3'
miRNA:   3'- -CCaGCUGCa--GCAGuGCCU--UGU-------UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.