miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 3' -53.2 NC_002794.1 + 61643 1.11 0.007322
Target:  5'- uGGUCGACGUCGUCACGGAACAACCCGu -3'
miRNA:   3'- -CCAGCUGCAGCAGUGCCUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 135840 0.85 0.250391
Target:  5'- cGUCGGCGUCGUC-CGGAugAAUCCGc -3'
miRNA:   3'- cCAGCUGCAGCAGuGCCUugUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 140184 0.85 0.250391
Target:  5'- gGGUCGgcgacgGCGUCGUCGaGGGGCGACCCGg -3'
miRNA:   3'- -CCAGC------UGCAGCAGUgCCUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 48608 0.8 0.487926
Target:  5'- cGUCGGCGUCGgccucagaCGCGGAGCGGCCg- -3'
miRNA:   3'- cCAGCUGCAGCa-------GUGCCUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 189864 0.79 0.506717
Target:  5'- cGUCGGCGUCGUCGCcgccGAcCGGCCCGc -3'
miRNA:   3'- cCAGCUGCAGCAGUGc---CUuGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 110155 0.76 0.654361
Target:  5'- gGGUgaGcACGUCGUCGCGGGGCAugagGCUCGa -3'
miRNA:   3'- -CCAg-C-UGCAGCAGUGCCUUGU----UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 148122 0.76 0.684189
Target:  5'- cGGUCGGUGUCGggCGCGGGGCcGCCgGg -3'
miRNA:   3'- -CCAGCUGCAGCa-GUGCCUUGuUGGgC- -5'
10824 3' -53.2 NC_002794.1 + 73863 0.76 0.69406
Target:  5'- uGGUCuuCGUCG-CGgacCGGGACGACCCGg -3'
miRNA:   3'- -CCAGcuGCAGCaGU---GCCUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 188743 0.75 0.732967
Target:  5'- cGGUCGACcaCGaUCAggaacgccacgUGGAACAGCCCGg -3'
miRNA:   3'- -CCAGCUGcaGC-AGU-----------GCCUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 133375 0.74 0.751955
Target:  5'- cGUCGGuCGUCGUCcgGCGGucaugauCGGCCCGg -3'
miRNA:   3'- cCAGCU-GCAGCAG--UGCCuu-----GUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 111805 0.74 0.761302
Target:  5'- aGGUCguagccgcaGAUGUCGUCccagaaggcGCGGAACGucuGCCCGa -3'
miRNA:   3'- -CCAG---------CUGCAGCAG---------UGCCUUGU---UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 157049 0.74 0.788653
Target:  5'- aGUcCGGCGagacCGUCGCGGAGCAugGCCCc -3'
miRNA:   3'- cCA-GCUGCa---GCAGUGCCUUGU--UGGGc -5'
10824 3' -53.2 NC_002794.1 + 29098 0.74 0.797512
Target:  5'- cGGcUCGuCGUCGUCACG-AGCGACCa- -3'
miRNA:   3'- -CC-AGCuGCAGCAGUGCcUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 66027 0.74 0.797512
Target:  5'- cGGUCGucgcCGUCGUCGuCGGGccggcagcgGCGGCCUGu -3'
miRNA:   3'- -CCAGCu---GCAGCAGU-GCCU---------UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 82127 0.73 0.814795
Target:  5'- -cUCGGCGUgggCGUCACGuGGGCGgacACCCGg -3'
miRNA:   3'- ccAGCUGCA---GCAGUGC-CUUGU---UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 141169 0.73 0.823203
Target:  5'- --aCGACGUCGUCGCGaGAACcgUUCGa -3'
miRNA:   3'- ccaGCUGCAGCAGUGC-CUUGuuGGGC- -5'
10824 3' -53.2 NC_002794.1 + 137347 0.72 0.855106
Target:  5'- cGGcUCGGCGUCGUCGgGGucuucuuCGAgCCGg -3'
miRNA:   3'- -CC-AGCUGCAGCAGUgCCuu-----GUUgGGC- -5'
10824 3' -53.2 NC_002794.1 + 182917 0.72 0.862616
Target:  5'- aGUCGAUGUCGUCGCucuGGAAguagucCGGCgCCGg -3'
miRNA:   3'- cCAGCUGCAGCAGUG---CCUU------GUUG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 65233 0.72 0.869927
Target:  5'- cGGgCGGCgGUCGcCGCGGcGGCGAUCCGg -3'
miRNA:   3'- -CCaGCUG-CAGCaGUGCC-UUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 116953 0.72 0.869927
Target:  5'- cGG-CGGCGUCGgcgggCGCaGGAACgGGCCCa -3'
miRNA:   3'- -CCaGCUGCAGCa----GUG-CCUUG-UUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.