miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 3' -53.2 NC_002794.1 + 149510 0.71 0.883935
Target:  5'- uGGUgaCGGgGUCGUCGCcgGGAGCgGACCUGg -3'
miRNA:   3'- -CCA--GCUgCAGCAGUG--CCUUG-UUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 107228 0.71 0.883935
Target:  5'- cGGcgcgCGACGggggcggCGUCGCGGAcCuGGCCCGg -3'
miRNA:   3'- -CCa---GCUGCa------GCAGUGCCUuG-UUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 110566 0.71 0.897091
Target:  5'- cGUCGcCGUCGUCGaucgGGAAgGugCCGa -3'
miRNA:   3'- cCAGCuGCAGCAGUg---CCUUgUugGGC- -5'
10824 3' -53.2 NC_002794.1 + 113534 0.71 0.909366
Target:  5'- cGGcUCGGCGUCGcCGgccCGGAGCAgGCgCCGg -3'
miRNA:   3'- -CC-AGCUGCAGCaGU---GCCUUGU-UG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 185185 0.71 0.909366
Target:  5'- cGGUCGGCGcggUCGgCGCGGucaucGCGGCUCGc -3'
miRNA:   3'- -CCAGCUGC---AGCaGUGCCu----UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 47415 0.71 0.909366
Target:  5'- cGUCGGCGcCGUCgcGCGGAGC-GCCa- -3'
miRNA:   3'- cCAGCUGCaGCAG--UGCCUUGuUGGgc -5'
10824 3' -53.2 NC_002794.1 + 138404 0.71 0.915168
Target:  5'- cGUCGAgGUCGUCGCcGGccgcCGACUCGu -3'
miRNA:   3'- cCAGCUgCAGCAGUG-CCuu--GUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 194946 0.71 0.915168
Target:  5'- cGG-CGACGUCGUCagcaGCGGcACgAACgCCGg -3'
miRNA:   3'- -CCaGCUGCAGCAG----UGCCuUG-UUG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 119488 0.7 0.922908
Target:  5'- uGGUCGGCugcguccucggggucGUCGgcggCGCGGAGcCGGCCgCGg -3'
miRNA:   3'- -CCAGCUG---------------CAGCa---GUGCCUU-GUUGG-GC- -5'
10824 3' -53.2 NC_002794.1 + 118314 0.7 0.924509
Target:  5'- cGUCGuCGUCGUCGCGacgggcggcgagaaGAGCAggucGCCCc -3'
miRNA:   3'- cCAGCuGCAGCAGUGC--------------CUUGU----UGGGc -5'
10824 3' -53.2 NC_002794.1 + 19511 0.7 0.926089
Target:  5'- aGGUCGcgccgcucggaGCGcCGgCGCGGcGCGGCCCGc -3'
miRNA:   3'- -CCAGC-----------UGCaGCaGUGCCuUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 193067 0.7 0.926089
Target:  5'- cGG-CuGCGggcCGUCGCGGGACAGCCg- -3'
miRNA:   3'- -CCaGcUGCa--GCAGUGCCUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 30083 0.7 0.926089
Target:  5'- cGGUCGACGaggCG-CGCGGccgguccCGACCCa -3'
miRNA:   3'- -CCAGCUGCa--GCaGUGCCuu-----GUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 35782 0.7 0.931208
Target:  5'- cGcCGGCGUCGUCucCGGcgUGACCCu -3'
miRNA:   3'- cCaGCUGCAGCAGu-GCCuuGUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 14739 0.7 0.931208
Target:  5'- gGGUcCGGCG-CGUCAuCGGA---GCCCGa -3'
miRNA:   3'- -CCA-GCUGCaGCAGU-GCCUuguUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 158110 0.7 0.931208
Target:  5'- cGGUCG-CGcCGUaGCGGGA-GACCCGg -3'
miRNA:   3'- -CCAGCuGCaGCAgUGCCUUgUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 18817 0.7 0.936098
Target:  5'- gGGUCGGCGaccUCGgccggCGCGGAGgaGACCuCGa -3'
miRNA:   3'- -CCAGCUGC---AGCa----GUGCCUUg-UUGG-GC- -5'
10824 3' -53.2 NC_002794.1 + 92293 0.7 0.936098
Target:  5'- aGGUCGGCGaCGagGCGGGGCuggGCgCGg -3'
miRNA:   3'- -CCAGCUGCaGCagUGCCUUGu--UGgGC- -5'
10824 3' -53.2 NC_002794.1 + 128574 0.69 0.945199
Target:  5'- -cUCGGCGUCGUguaCACGuucGCGACCCu -3'
miRNA:   3'- ccAGCUGCAGCA---GUGCcu-UGUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 131019 0.69 0.945199
Target:  5'- gGGUCgGugGUCGU-GCGGcGCGGCCgGc -3'
miRNA:   3'- -CCAG-CugCAGCAgUGCCuUGUUGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.