miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 3' -53.2 NC_002794.1 + 115144 0.67 0.987887
Target:  5'- gGGUgGAgGUCgGUCACGGuccgcaccagcuccuGguagACGGCCCGg -3'
miRNA:   3'- -CCAgCUgCAG-CAGUGCC---------------U----UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 12237 0.67 0.987295
Target:  5'- cGG-CGGCGcCGUcCGCGGcgcCGAUCCGg -3'
miRNA:   3'- -CCaGCUGCaGCA-GUGCCuu-GUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 145839 0.67 0.987295
Target:  5'- cGUCGACgGUCGcCACGcucGACGAgCCGc -3'
miRNA:   3'- cCAGCUG-CAGCaGUGCc--UUGUUgGGC- -5'
10824 3' -53.2 NC_002794.1 + 183209 0.67 0.987295
Target:  5'- cGG-CGGCGcguUCGUCGCcagcGAccagGCGACCCGa -3'
miRNA:   3'- -CCaGCUGC---AGCAGUGc---CU----UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 47755 0.67 0.985717
Target:  5'- uGG-CGGcCGUgGUCGCGGcACAACgCGc -3'
miRNA:   3'- -CCaGCU-GCAgCAGUGCCuUGUUGgGC- -5'
10824 3' -53.2 NC_002794.1 + 140674 0.67 0.985717
Target:  5'- gGGUCGGgcgcagGUCGgugCgACGGAccggccgccGCGACCCGg -3'
miRNA:   3'- -CCAGCUg-----CAGCa--G-UGCCU---------UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 92252 0.67 0.985717
Target:  5'- -cUCGGCGgCGUCGCuGGcGGCGGCgCCGg -3'
miRNA:   3'- ccAGCUGCaGCAGUG-CC-UUGUUG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 44301 0.67 0.985717
Target:  5'- gGGcCGGCGagG-CGgGGAGCGACCgCGa -3'
miRNA:   3'- -CCaGCUGCagCaGUgCCUUGUUGG-GC- -5'
10824 3' -53.2 NC_002794.1 + 38071 0.67 0.985717
Target:  5'- -cUCGACGUcCGUCuCGGAcacggucagcGCGACCgGc -3'
miRNA:   3'- ccAGCUGCA-GCAGuGCCU----------UGUUGGgC- -5'
10824 3' -53.2 NC_002794.1 + 146998 0.67 0.983994
Target:  5'- cGGcCGACGUCG--GCGGcGGCGGCCg- -3'
miRNA:   3'- -CCaGCUGCAGCagUGCC-UUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 135490 0.67 0.983994
Target:  5'- cGUCGACG-CG-CGCGGGcCcgauGCCCGc -3'
miRNA:   3'- cCAGCUGCaGCaGUGCCUuGu---UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 105515 0.67 0.983447
Target:  5'- cGGUCG-CGcCGUCcgaaGCGGAcgugagauccggcgGCGGCUCGg -3'
miRNA:   3'- -CCAGCuGCaGCAG----UGCCU--------------UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 41187 0.67 0.982117
Target:  5'- aGGcCGAgcguCGUCGUCACGGcGCugcuGCCa- -3'
miRNA:   3'- -CCaGCU----GCAGCAGUGCCuUGu---UGGgc -5'
10824 3' -53.2 NC_002794.1 + 116272 0.67 0.982117
Target:  5'- aGG-CGGCGUCGUaguaGAACGugCCGa -3'
miRNA:   3'- -CCaGCUGCAGCAgugcCUUGUugGGC- -5'
10824 3' -53.2 NC_002794.1 + 71772 0.67 0.981921
Target:  5'- cGGUCcGCGcCGUCGCGcGGCGAgucgcccCCCGg -3'
miRNA:   3'- -CCAGcUGCaGCAGUGCcUUGUU-------GGGC- -5'
10824 3' -53.2 NC_002794.1 + 142719 0.67 0.98008
Target:  5'- uGGUgGugGggGUCGCGGuaacGCAGgCCGa -3'
miRNA:   3'- -CCAgCugCagCAGUGCCu---UGUUgGGC- -5'
10824 3' -53.2 NC_002794.1 + 113663 0.67 0.98008
Target:  5'- -cUCGGCGUCcagCGCGGcgAGCAgGCCCGc -3'
miRNA:   3'- ccAGCUGCAGca-GUGCC--UUGU-UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 134469 0.67 0.98008
Target:  5'- gGGaCGGCGcucUCGUCGCcaGAccgcGCGACCCGg -3'
miRNA:   3'- -CCaGCUGC---AGCAGUGc-CU----UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 110437 0.67 0.98008
Target:  5'- uGUCGuCGUCgGUgGCGGAggccgGCGAgCCGg -3'
miRNA:   3'- cCAGCuGCAG-CAgUGCCU-----UGUUgGGC- -5'
10824 3' -53.2 NC_002794.1 + 45697 0.67 0.979652
Target:  5'- -cUCGACGUCGgaCACGuuauugugguccAACAGCCCGg -3'
miRNA:   3'- ccAGCUGCAGCa-GUGCc-----------UUGUUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.