miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 3' -53.2 NC_002794.1 + 142957 0.68 0.977874
Target:  5'- aGUCGGCGgcgucgagcuccUCGUCGaGGGGCugcguGCCCGc -3'
miRNA:   3'- cCAGCUGC------------AGCAGUgCCUUGu----UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 146235 0.68 0.977874
Target:  5'- cGGUCGcgGCGUCGUCAUcGucguCGACCuCGu -3'
miRNA:   3'- -CCAGC--UGCAGCAGUGcCuu--GUUGG-GC- -5'
10824 3' -53.2 NC_002794.1 + 131383 0.68 0.977874
Target:  5'- uGGUCGGCGcCGcgcccgucaUCACGGccucGCCCGu -3'
miRNA:   3'- -CCAGCUGCaGC---------AGUGCCuuguUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 104440 0.68 0.977874
Target:  5'- ---gGACGcCGcCGCGG-GCGGCCCGa -3'
miRNA:   3'- ccagCUGCaGCaGUGCCuUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 78013 0.68 0.975494
Target:  5'- cGG-CGGCGcCGUCGgGaGAAC-GCCCGc -3'
miRNA:   3'- -CCaGCUGCaGCAGUgC-CUUGuUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 146345 0.68 0.975494
Target:  5'- --cCGuCGUCGaUCGCGGcGGCcGCCCGg -3'
miRNA:   3'- ccaGCuGCAGC-AGUGCC-UUGuUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 176717 0.68 0.975494
Target:  5'- cGGgacCGACGgCGUCugGaGAuGCGACCUGu -3'
miRNA:   3'- -CCa--GCUGCaGCAGugC-CU-UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 153341 0.68 0.972932
Target:  5'- cGG-CGACGcgugUUGUCA-GGAcGCGGCCCGg -3'
miRNA:   3'- -CCaGCUGC----AGCAGUgCCU-UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 120034 0.68 0.972932
Target:  5'- cGGg-GACGUCGUCaugacggcgGCGGuGGCGGCCgCGg -3'
miRNA:   3'- -CCagCUGCAGCAG---------UGCC-UUGUUGG-GC- -5'
10824 3' -53.2 NC_002794.1 + 114978 0.68 0.972932
Target:  5'- -cUCGGCGcaggCGUCcuguaguucGCGGAGCAGCUCu -3'
miRNA:   3'- ccAGCUGCa---GCAG---------UGCCUUGUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 90613 0.68 0.972932
Target:  5'- cGGUCGcgguggaugagcGCGgaaCGUCAUGGAagACGAUCUGa -3'
miRNA:   3'- -CCAGC------------UGCa--GCAGUGCCU--UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 46146 0.68 0.972932
Target:  5'- aGUCGGCGUCGaUCGCccucuGGAucgcgcACAGCgCCGc -3'
miRNA:   3'- cCAGCUGCAGC-AGUG-----CCU------UGUUG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 23461 0.68 0.970181
Target:  5'- cGGaUCGACGUCGggGCGGAGgGGUCUGc -3'
miRNA:   3'- -CC-AGCUGCAGCagUGCCUUgUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 55304 0.68 0.970181
Target:  5'- cGG-CGGCGUCGcggcgggCGCGGGcggcuuccgAgGACCCGg -3'
miRNA:   3'- -CCaGCUGCAGCa------GUGCCU---------UgUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 107518 0.68 0.967236
Target:  5'- cGGUCGACGcCGacggccggCGCGGcgccggcggcGACGACCgCGg -3'
miRNA:   3'- -CCAGCUGCaGCa-------GUGCC----------UUGUUGG-GC- -5'
10824 3' -53.2 NC_002794.1 + 82057 0.68 0.967236
Target:  5'- cGG-CGGCGUCGUCcuCGGccucgcCGGCCCu -3'
miRNA:   3'- -CCaGCUGCAGCAGu-GCCuu----GUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 105609 0.68 0.967236
Target:  5'- -uUCGGCgGUCGUCAggcuCGGcgacCAGCCCGa -3'
miRNA:   3'- ccAGCUG-CAGCAGU----GCCuu--GUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 20888 0.68 0.967236
Target:  5'- cGUCGACcuccuUCGUCG-GGAACGACCa- -3'
miRNA:   3'- cCAGCUGc----AGCAGUgCCUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 188618 0.68 0.964091
Target:  5'- aGGUgugCGAaaaCGUC-UCGCGGAcccgggucuugaGCAGCCCGg -3'
miRNA:   3'- -CCA---GCU---GCAGcAGUGCCU------------UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 112193 0.68 0.964091
Target:  5'- uGUCGAgGUaCGUCugcccgUGGAGCAcgGCCCGc -3'
miRNA:   3'- cCAGCUgCA-GCAGu-----GCCUUGU--UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.