miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 3' -53.2 NC_002794.1 + 880 0.69 0.954942
Target:  5'- cGGUCGGCGUgCG-CGCGGGccgggugccaacgccGCucCCCGc -3'
miRNA:   3'- -CCAGCUGCA-GCaGUGCCU---------------UGuuGGGC- -5'
10824 3' -53.2 NC_002794.1 + 12237 0.67 0.987295
Target:  5'- cGG-CGGCGcCGUcCGCGGcgcCGAUCCGg -3'
miRNA:   3'- -CCaGCUGCaGCA-GUGCCuu-GUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 14292 0.66 0.990044
Target:  5'- cGUCaGCGUCGaggCGCGGggUAGCUUu -3'
miRNA:   3'- cCAGcUGCAGCa--GUGCCuuGUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 14739 0.7 0.931208
Target:  5'- gGGUcCGGCG-CGUCAuCGGA---GCCCGa -3'
miRNA:   3'- -CCA-GCUGCaGCAGU-GCCUuguUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 18817 0.7 0.936098
Target:  5'- gGGUCGGCGaccUCGgccggCGCGGAGgaGACCuCGa -3'
miRNA:   3'- -CCAGCUGC---AGCa----GUGCCUUg-UUGG-GC- -5'
10824 3' -53.2 NC_002794.1 + 18881 0.69 0.960741
Target:  5'- --cCGACGcCGgCGCGGAGCGucACCCc -3'
miRNA:   3'- ccaGCUGCaGCaGUGCCUUGU--UGGGc -5'
10824 3' -53.2 NC_002794.1 + 19511 0.7 0.926089
Target:  5'- aGGUCGcgccgcucggaGCGcCGgCGCGGcGCGGCCCGc -3'
miRNA:   3'- -CCAGC-----------UGCaGCaGUGCCuUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 20888 0.68 0.967236
Target:  5'- cGUCGACcuccuUCGUCG-GGAACGACCa- -3'
miRNA:   3'- cCAGCUGc----AGCAGUgCCUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 22388 0.69 0.949413
Target:  5'- cGGUCgGGCGUCGUCuccguaaaguCGGuagacGAUGACCCa -3'
miRNA:   3'- -CCAG-CUGCAGCAGu---------GCC-----UUGUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 23461 0.68 0.970181
Target:  5'- cGGaUCGACGUCGggGCGGAGgGGUCUGc -3'
miRNA:   3'- -CC-AGCUGCAGCagUGCCUUgUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 29098 0.74 0.797512
Target:  5'- cGGcUCGuCGUCGUCACG-AGCGACCa- -3'
miRNA:   3'- -CC-AGCuGCAGCAGUGCcUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 30083 0.7 0.926089
Target:  5'- cGGUCGACGaggCG-CGCGGccgguccCGACCCa -3'
miRNA:   3'- -CCAGCUGCa--GCaGUGCCuu-----GUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 35662 0.66 0.990044
Target:  5'- cGGUcucCGACGUgGUCAacgaggucaucCGGGAagaguGCCCGg -3'
miRNA:   3'- -CCA---GCUGCAgCAGU-----------GCCUUgu---UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 35782 0.7 0.931208
Target:  5'- cGcCGGCGUCGUCucCGGcgUGACCCu -3'
miRNA:   3'- cCaGCUGCAGCAGu-GCCuuGUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 38071 0.67 0.985717
Target:  5'- -cUCGACGUcCGUCuCGGAcacggucagcGCGACCgGc -3'
miRNA:   3'- ccAGCUGCA-GCAGuGCCU----------UGUUGGgC- -5'
10824 3' -53.2 NC_002794.1 + 40676 0.69 0.960741
Target:  5'- cGGUCGucguCGUCGUCGuCGG-ACGAggugUCCGu -3'
miRNA:   3'- -CCAGCu---GCAGCAGU-GCCuUGUU----GGGC- -5'
10824 3' -53.2 NC_002794.1 + 41187 0.67 0.982117
Target:  5'- aGGcCGAgcguCGUCGUCACGGcGCugcuGCCa- -3'
miRNA:   3'- -CCaGCU----GCAGCAGUGCCuUGu---UGGgc -5'
10824 3' -53.2 NC_002794.1 + 44301 0.67 0.985717
Target:  5'- gGGcCGGCGagG-CGgGGAGCGACCgCGa -3'
miRNA:   3'- -CCaGCUGCagCaGUgCCUUGUUGG-GC- -5'
10824 3' -53.2 NC_002794.1 + 44541 0.66 0.991232
Target:  5'- cGcCGuCGUCGUCGcCGGcGGCGgcGCCCGu -3'
miRNA:   3'- cCaGCuGCAGCAGU-GCC-UUGU--UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 45697 0.67 0.979652
Target:  5'- -cUCGACGUCGgaCACGuuauugugguccAACAGCCCGg -3'
miRNA:   3'- ccAGCUGCAGCa-GUGCc-----------UUGUUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.