miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 3' -53.2 NC_002794.1 + 46146 0.68 0.972932
Target:  5'- aGUCGGCGUCGaUCGCccucuGGAucgcgcACAGCgCCGc -3'
miRNA:   3'- cCAGCUGCAGC-AGUG-----CCU------UGUUG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 47415 0.71 0.909366
Target:  5'- cGUCGGCGcCGUCgcGCGGAGC-GCCa- -3'
miRNA:   3'- cCAGCUGCaGCAG--UGCCUUGuUGGgc -5'
10824 3' -53.2 NC_002794.1 + 47755 0.67 0.985717
Target:  5'- uGG-CGGcCGUgGUCGCGGcACAACgCGc -3'
miRNA:   3'- -CCaGCU-GCAgCAGUGCCuUGUUGgGC- -5'
10824 3' -53.2 NC_002794.1 + 48608 0.8 0.487926
Target:  5'- cGUCGGCGUCGgccucagaCGCGGAGCGGCCg- -3'
miRNA:   3'- cCAGCUGCAGCa-------GUGCCUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 50774 0.66 0.988597
Target:  5'- cGG-CGACGgcgCGUCuCGGGcgGCGccuccucGCCCGg -3'
miRNA:   3'- -CCaGCUGCa--GCAGuGCCU--UGU-------UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 53125 0.66 0.990044
Target:  5'- -cUCG-CGUCGacCGCGGcgcuCAGCCCGg -3'
miRNA:   3'- ccAGCuGCAGCa-GUGCCuu--GUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 53594 0.66 0.992305
Target:  5'- uGUCGGCGUCGgcgUCAcCGGGccgccGCAGCgUCGg -3'
miRNA:   3'- cCAGCUGCAGC---AGU-GCCU-----UGUUG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 55304 0.68 0.970181
Target:  5'- cGG-CGGCGUCGcggcgggCGCGGGcggcuuccgAgGACCCGg -3'
miRNA:   3'- -CCaGCUGCAGCa------GUGCCU---------UgUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 58057 0.69 0.949413
Target:  5'- cGUCGGCGgccccggCGgcgGCGGGACGggcgGCCCGg -3'
miRNA:   3'- cCAGCUGCa------GCag-UGCCUUGU----UGGGC- -5'
10824 3' -53.2 NC_002794.1 + 61643 1.11 0.007322
Target:  5'- uGGUCGACGUCGUCACGGAACAACCCGu -3'
miRNA:   3'- -CCAGCUGCAGCAGUGCCUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 61917 0.66 0.99327
Target:  5'- --gCGACGUCGUCACccucgaGGAgaucGCGcucGCCCc -3'
miRNA:   3'- ccaGCUGCAGCAGUG------CCU----UGU---UGGGc -5'
10824 3' -53.2 NC_002794.1 + 65233 0.72 0.869927
Target:  5'- cGGgCGGCgGUCGcCGCGGcGGCGAUCCGg -3'
miRNA:   3'- -CCaGCUG-CAGCaGUGCC-UUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 65294 0.66 0.991232
Target:  5'- -cUCGGCGUCGUCcuCGaGAcgACAGCaCCa -3'
miRNA:   3'- ccAGCUGCAGCAGu-GC-CU--UGUUG-GGc -5'
10824 3' -53.2 NC_002794.1 + 66027 0.74 0.797512
Target:  5'- cGGUCGucgcCGUCGUCGuCGGGccggcagcgGCGGCCUGu -3'
miRNA:   3'- -CCAGCu---GCAGCAGU-GCCU---------UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 67080 0.66 0.990044
Target:  5'- -cUUGAUGUaCGUguCGGGGCcGACCCGu -3'
miRNA:   3'- ccAGCUGCA-GCAguGCCUUG-UUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 71772 0.67 0.981921
Target:  5'- cGGUCcGCGcCGUCGCGcGGCGAgucgcccCCCGg -3'
miRNA:   3'- -CCAGcUGCaGCAGUGCcUUGUU-------GGGC- -5'
10824 3' -53.2 NC_002794.1 + 73863 0.76 0.69406
Target:  5'- uGGUCuuCGUCG-CGgacCGGGACGACCCGg -3'
miRNA:   3'- -CCAGcuGCAGCaGU---GCCUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 78013 0.68 0.975494
Target:  5'- cGG-CGGCGcCGUCGgGaGAAC-GCCCGc -3'
miRNA:   3'- -CCaGCUGCaGCAGUgC-CUUGuUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 82057 0.68 0.967236
Target:  5'- cGG-CGGCGUCGUCcuCGGccucgcCGGCCCu -3'
miRNA:   3'- -CCaGCUGCAGCAGu-GCCuu----GUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 82127 0.73 0.814795
Target:  5'- -cUCGGCGUgggCGUCACGuGGGCGgacACCCGg -3'
miRNA:   3'- ccAGCUGCA---GCAGUGC-CUUGU---UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.